KEGG   Trichoderma reesei RUT C-30: M419DRAFT_141737
Entry
M419DRAFT_141737  CDS       T06031                                 
Name
(GenBank) RNB-domain-containing protein
  KO
K12585  exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
trr  Trichoderma reesei RUT C-30
Pathway
trr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:trr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    M419DRAFT_141737
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:trr03019]
    M419DRAFT_141737
Messenger RNA biogenesis [BR:trr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     M419DRAFT_141737
SSDB
Motif
Pfam: RNB Rrp44_CSD1 Rrp44_S1 OB_Dis3 PIN_4 CSD2 Dis3l2_C_term
Other DBs
NCBI-ProteinID: ETS01291
JGI: TrireRUTC30_1_141737
UniProt: A0A024S9V9
Position
Unknown
AA seq 985 aa
MTSLKRPQGSDQLSQNISNKVYVRSTRSGKVQKIVREVYLRTDIPCSSNLCRACLSQAPR
NAVNQALPFVLSARPAGTKSYPQGHYLVPDTNALLNAMDLFEQSSSFYDVIILQTVLEEL
KNRSLPLYNRLVGLTKSEDKRFYVFFNEFRLETYVNREANETVNDRNDRAVRQAVKWYGE
HLALTKAARVPAVVMLSDDRENLRKAREQGLQASSLADYVSELEDGDRLLDMIAESQLQA
QGGFKPSTQPLYPEYYTSSRMMTGVKAGLLHQGIFNVSPYNYLEGSIKVPAFPKPLLILG
RENINRSIDGDVVVVELLPQDQWKSPSTKIIEEDTITKNENADTEERQDFISDKERKALQ
EEVKRTQKATGENQLQPTAKVVGVVKRNWRQYVGHIDPSTASKAPSQGRRLDSVFLIPMD
KKIPKIRLRTRQVSELLGKRLLVTVDSWDRDSRHPVGHLVRSLGELETKAAATEALLLEW
DVQYRPFPKTVLDCLPKEGHDWRVPESKEDPGWRDREDLRDLLICSIDPPGCQDIDDALH
ARLLPNGNYEVGVHIADVSHFVKPANAMDTEASIRGTTVYLVDKRIDMLPMLLGTDLCSL
KPYVERFAFTVIWELDENADIVNVRFTKSVIKSREAFSYEQAQLRIDDASQQDDLTKGMR
MLLMLSKKLKKKRMDAGALSLSSPEIKVHMESESSDPIDVKTKELLDTNSLVEEFMLFAN
VSVAAKIYEAFPQTAILRRHAAPPKTNFDELADQLRIKRGLELRTDSSKALADSLDKCVD
PKEPFFNTLVRIMATRCMMSAEYFCSGTQAYPEFRHYGLASEIYTHFTSPIRRYADLLAH
RQLAAAIGYEAVHPSVRSRGRLEAVCKNINVRHRNAQMAGRASIAYYVGQALKGKVAEEE
AFVMKIFSNGFVVLVPRFGIEGLIRLRDLAEPEPESEYDAETYTLTTKGERSVRVELFQK
VVVRVHDDKDERTGKRGVKMELVSA
NT seq 2958 nt   +upstreamnt  +downstreamnt
atgacgagcctcaagagacctcaggggtcggaccagctgtcccagaacatctccaacaag
gtctatgtccggtcgacgcgcagcggaaaggtgcagaagattgtccgggaggtctatctg
agaacggatattccatgctcatccaacctgtgcagggcctgcttgagccaggcaccccga
aatgcggtcaatcaagccttaccgtttgttctgtcggccagaccggctggaaccaagtcg
tatccgcagggtcactacttggttcccgataccaacgcgctgctcaacgccatggactta
ttcgagcagagctcgtcattctacgacgtcatcatcttgcagaccgtcctggaagagctt
aagaaccgctcactaccgctctacaaccgcctcgtcgggctgaccaagagcgaagacaag
cgattctatgtcttcttcaacgagttccggctggagacgtatgtcaaccgcgaagccaac
gagaccgtcaacgacaggaatgaccgtgccgtgaggcaggctgtcaagtggtacggagag
caccttgcgctgaccaaggccgcgcgggtcccggccgtggtcatgttgagcgacgacagg
gagaatctcagaaaagcccgggagcaaggcctgcaggcttcttcgctggcggactacgtt
agcgagctggaagacggcgataggctcttggacatgattgccgagtcacagcttcaggcg
cagggtggcttcaagccatctactcagcccctgtatccggagtactacacttcttcgaga
atgatgacgggggtcaaggcgggcctgctgcatcagggcatcttcaatgtgtctccgtat
aattatctcgagggttcgatcaaggtgcctgctttcccgaaacctttgcttattctgggt
cgcgagaacatcaaccggtctattgacggcgacgttgtcgttgtcgagctgctgccgcag
gatcaatggaagtcaccgtcgacaaagattatcgaagaagacaccatcacgaagaatgag
aatgcggacacagaggagcgccaagactttatctcggataaggagcggaaggcacttcag
gaggaggtgaaaaggacacaaaaggccacaggagagaaccaactgcagccgacagccaag
gttgtgggcgtggtgaagcgtaactggcgacagtacgttggccacatcgacccgtcaacg
gccagcaaggctccgtcacaaggccggagactagacagcgtcttcctcatcccgatggac
aagaagatccccaagatccgtcttcgtacccgccaagtgtctgagttgttgggcaagaga
ctcttggttacagttgattcttgggatagagattcaagacatcccgtggggcatctggtt
cgctccctgggagagctcgagaccaaggcggcggcgaccgaagcgttgctcttggagtgg
gacgtccagtaccggccttttcccaagacggtgctcgattgccttccaaaggagggccac
gactggagagtgccagagagcaaagaggatcctggctggagagaccgagaagaccttcgg
gatctcctcatctgcagtatcgaccccccggggtgtcaagacatcgacgatgctcttcat
gccaggctgctaccgaatggcaactacgaggtcggtgttcacattgcggacgtatcacac
tttgtcaagcccgccaacgcaatggacacggaggcgagcattcgtggtaccaccgtttac
ctggtcgacaagcgcatagacatgcttccgatgctgctcgggacggatctctgctctctc
aagccctacgtcgagcgcttcgcattcacagtcatctgggagcttgacgagaacgccgac
attgtcaacgtgcgcttcacaaagtcggtgatcaagtcccgcgaggcattcagctacgaa
caagcacagctccgcatcgacgacgcgtcgcagcaggatgacctcacaaagggcatgcga
atgctgctcatgctctcaaagaagctcaagaagaagcgtatggacgccggtgccctgagc
ctgtcatcccccgagatcaaggtgcacatggaatccgagtcctcggaccccatcgacgtc
aagacgaaggagcttctcgacaccaactcgctcgtcgaagagttcatgctgttcgccaac
gtcagcgtcgccgccaagatctacgaggcgttcccccagacggccatcctgcgtcgccac
gccgctcctcccaagaccaactttgacgagctggccgaccagctgcgcatcaagcgcggc
ctggagctgcgcaccgactcgagcaaggcgctggccgactccctggacaagtgcgtcgac
cccaaggagcccttcttcaacacgctggtgcgcatcatggccacgcgctgcatgatgagc
gcagagtacttctgctccgggacccaggcgtatcccgagttccgccactacggcctcgcc
tcggagatttacacgcacttcacctcccccatccgtcgctacgcggaccttctcgcccac
aggcagctcgccgccgccatcggctacgaggccgtgcacccttccgtccgcagccggggc
cgcctggaggccgtctgcaagaacatcaacgtgcgccaccgcaacgcgcagatggccggc
cgggcgagcatcgcgtactacgtcgggcaggccctcaagggtaaggtcgccgaggaggag
gcctttgtgatgaagatcttcagcaacggcttcgtcgtgctggtgccgcggttcggcatc
gaggggctgattcgcctgcgcgacttggccgagcccgagccggagagcgagtacgacgcg
gagacgtatacgcttacgacaaagggcgagaggagcgtcagggtggagctcttccagaag
gttgtcgtgagggtgcatgatgataaggatgagaggacggggaagaggggtgtcaagatg
gagttggtgagtgcgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   JGI (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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