KEGG   Trichoderma reesei RUT C-30: M419DRAFT_4702
Entry
M419DRAFT_4702    CDS       T06031                                 
Name
(GenBank) DNA replication factor C, large subunit
  KO
K10754  replication factor C subunit 1
Organism
trr  Trichoderma reesei RUT C-30
Pathway
trr03030  DNA replication
trr03410  Base excision repair
trr03420  Nucleotide excision repair
trr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:trr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    M419DRAFT_4702
   03410 Base excision repair
    M419DRAFT_4702
   03420 Nucleotide excision repair
    M419DRAFT_4702
   03430 Mismatch repair
    M419DRAFT_4702
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:trr03032]
    M419DRAFT_4702
   03400 DNA repair and recombination proteins [BR:trr03400]
    M419DRAFT_4702
DNA replication proteins [BR:trr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    M419DRAFT_4702
DNA repair and recombination proteins [BR:trr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     M419DRAFT_4702
SSDB
Motif
Pfam: RFC1 BRCT AAA Rad17 AAA_22 nSTAND3 AAA_18 AAA_16 DNA_pol3_delta BRCT_2 AAA_30 AAA_14 AAA_33 RuvB_N NTPase_1 AAA_28
Other DBs
NCBI-ProteinID: ETS06422
JGI: TrireRUTC30_1_4702
UniProt: A0A024SKS8
Position
Unknown
AA seq 1037 aa
MPDIRSFFAPKGGAPPKPAAAKPEPPAKGKRGKGRKVIEDSDDDEVVEETEPKGVAISAD
DYFASSKDPKTAKASQTPKKGDKKTIIEADVPVRSSPRPKKTMAKPAAPEDEDEDEDVAS
RPKRARNSYKAAPAPTHDDDDDDVYMDDGDEDADDIFAADAKGRNKRKNDDYEEEDSEDE
VIPQPRRIASRGRPAASAKKAEEKVKTTPATKKRKSPEQESDEEEELPRKKPAAASKPRA
PRAKKADQPEDEAIQNILDSVATVRAPTPPPKDGKPFDWRKSASGGNASAQPSQPAGELP
EGEEECLSGLTFVFTGVLQTIGREEAQALVKRYGGKVTGQPSSKTSFVVLGDDAGPSKLA
KIRSNGIKTIDEHGLFDLIRKLPAFGGTGKGAQKAQEKKKAEEEKVRQQVAEMEAEEKAQ
RREAEKEAKRLAAARGQPSSTPVKPAAAPTQLLTSKYAPTQLNQICGNKAQVEKIQRWLH
NWPKSKKYNFQKRGADGMGGERAIIISGPPGIGKTTAAHLAAKLEGYDVLESNASDTRSK
KLVEAGLSDVMNNTSLLGFFAGDGKSVHSEKKKIVLIMDEVDGMSAGDRGGVGALAKFCR
KTEVPLILICNERRLPKMKPFDHVAFDIRFNRPTVDQVRSRIMTICHREGLKMPPPVVDA
LIEGSNKDIRQIINMIATAKLDQSTMNFDQTKSMSKAWEKHVVLKPWDICQKMLGGGLFA
PASKATLNDKIELYFNDHEFSYLMIQENYLQTKPMALSGSGYRGREATLKALELFDQAAE
SISDGDLVDRMIHGPQQQWSLMPTHAVFSTVRPASFVAGQLLGSNFTSWLGNNSKAGKLG
RYIREIHSHMRLKSSGDHNEVRQEYLPVLWSQTVDRLQKEGTEAVEEVIDLMDSYYLTRE
DFDAIQELGVGPMDEERVKIETKTKAAFTRTYNSMNHPLPFIKASNVFAPKKQTKEMPDL
EEAIEEEDDAELLEAPDVDEDDEIDLKKDKYIKQPKVKKPAKKASKTSTGDDDDTADSKP
KGRAKAKATSAKGKAKK
NT seq 3114 nt   +upstreamnt  +downstreamnt
atgcctgatattcgatcattcttcgcgccaaagggtggtgcacccccgaagcctgcggct
gcaaagccagaaccgccggccaaaggaaagcgaggaaaagggcgcaaggtcatcgaagat
agcgacgatgacgaggtggtagaggagacggaaccaaaaggcgtagcaatatctgccgac
gactactttgcctcctccaaagatcccaagaccgctaaagcatctcaaactcccaagaag
ggcgacaagaagaccatcatcgaggccgatgttcctgtcaggtccagtcctcggcccaag
aagactatggcaaagccggctgcaccggaggatgaggatgaggatgaagatgtagcttct
cgaccgaagagggccagaaattcatacaaggccgctcccgctcccacccacgacgatgac
gacgatgacgtttatatggacgacggtgacgaggacgcggacgatatcttcgccgctgac
gccaaaggccgaaataagcgcaagaacgacgattacgaggaggaagactccgaagacgag
gtcattccacaacccagacggatcgcttcacggggacggcctgccgcttctgccaagaaa
gctgaagaaaaggtaaagacgacgccggcaaccaagaagagaaagtcgcctgaacaggaa
tccgatgaggaggaagagctgccaaggaagaaacctgcggcagcaagcaaaccgcgcgcg
ccaagggccaagaaagcagaccaacccgaggacgaagccatccagaacatcctagacagc
gtggctactgtacgagcgccaacacctcctcccaaggatggcaaaccctttgattggagg
aaatcagcctcaggcggtaatgcctcggcgcaaccttcgcagccagccggcgaactccca
gagggcgaggaagagtgtctcagtggattgacctttgttttcactggcgtgctgcaaacg
attggccgcgaggaagctcaggccctagtcaagcgatatgggggcaaagttacgggccag
cccagtagtaaaacgagtttcgtcgtgctcggagacgatgctggaccgtccaagttggcc
aagatcagatcaaacggaatcaagaccatcgatgagcatggcctctttgacctgatccgc
aagctcccagcatttggcgggacgggcaagggcgctcagaaagcgcaagagaagaagaag
gcggaggaagagaaggtgaggcaacaggttgccgaaatggaagcggaagagaaagcacag
aggcgagaggccgagaaagaagccaagagattggccgcagcccgagggcaacccagcagc
acgcctgtcaagcctgcagccgcgcccacccagctcctcacgtccaagtatgcgccgaca
cagctgaaccagatatgcggcaataaggcacaggtggagaagattcagcgatggcttcac
aactggccgaaatcgaagaagtacaacttccagaaacgtggcgctgatggcatgggaggc
gagcgagccatcatcatctctgggccccccggcattggcaagactacagctgcacacttg
gcggctaagcttgaaggctacgatgttctggagagcaatgcgagcgatacacgaagcaag
aagctagtcgaggccggtctcagcgacgtcatgaacaacacttccctgctgggattcttt
gcaggagatgggaagtctgtccactctgagaagaagaagattgtgctcatcatggacgaa
gtcgacggtatgtcggccggcgatcgcggaggagttggcgccctggccaagttctgcagg
aagacggaggtgcccttgatcctcatctgcaacgaacgaagactgcccaagatgaagccg
ttcgaccatgttgcgtttgatataagattcaaccgtccgacggtcgaccaagtccggtct
cgcatcatgacgatttgccatcgagaaggcttgaagatgcctccgccagtcgttgatgct
ctcattgagggcagcaacaaggatatccgccaaatcatcaacatgattgcgacagcgaag
ctcgaccagtcgaccatgaactttgaccaaaccaagtccatgtcaaaagcgtgggagaag
catgttgtgctcaagccgtgggatatctgccagaagatgcttggtggcggactctttgca
cctgcaagcaaggcgacgctcaatgacaagattgaactctacttcaacgatcacgagttc
agctacctcatgatccaagaaaactacctccagacgaagcccatggccctcagcggctcg
gggtacaggggtcgagaagctactttgaaagcgctcgagctctttgaccaggcggcagag
agcatcagtgacggtgaccttgtggatcgcatgatccacggaccgcagcagcaatggagc
ctcatgcctacgcatgccgtcttcagtactgtgaggcctgcgagcttcgttgccggccag
ttgctggggtccaactttacgtcttggctcggaaataacagcaaagctggaaaattgggc
cgatacattcgagagattcattcccacatgaggctcaagtcatcaggagaccataacgag
gttcgacaggagtacttgcctgtgctgtggtcgcagacggtggatcggctgcagaaagaa
ggaactgaagccgtggaagaggtcattgacctgatggacagctactacctcacccgagaa
gactttgacgccattcaggaactgggagtcggtcccatggacgaggagcgtgtcaagatt
gagaccaagacgaaggctgcctttactcgaacatacaactccatgaaccacccattgccc
ttcatcaaggccagcaatgtctttgcgccgaagaaacaaacgaaggagatgcccgacctg
gaagaagccattgaggaggaagatgacgccgagctgctggaagctccagacgttgacgag
gatgacgaaatcgatctgaagaaggataagtatatcaaacaaccaaaggtcaagaagccg
gcgaagaaggcatcgaagacgagtactggagatgacgacgacactgcggattcaaaaccg
aaaggccgcgccaaggccaaggcaacaagcgcgaagggaaaagcaaagaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   JGI (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (28)   

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