KEGG   Takifugu rubripes (torafugu): 101075002
Entry
101075002         CDS       T02386                                 
Name
(RefSeq) collagen alpha-1(IX) chain-like isoform X1
  KO
K08131  collagen type IX alpha
Organism
tru  Takifugu rubripes (torafugu)
Pathway
tru04510  Focal adhesion
tru04512  ECM-receptor interaction
tru04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tru00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    101075002
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    101075002
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    101075002
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:tru00535]
    101075002
Proteoglycans [BR:tru00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   101075002
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 101075002
NCBI-ProteinID: XP_029690495
Position
4:complement(14022071..14031477)
AA seq 566 aa
MGLLDHQDRGGLLGEMGKSGLPGAMGVRGPQGPRGPTGPRGAAGMLGSSDLCPNSCPPGT
PGHPGLPGMKGHKGVKGDAGEPGKQGHKGEEGEQGGPGEVGAQGPTGPQGIRGATGLMGP
KGEMGPRGLDGDPGPQGVAGAIGDRGQRGVIGEPGPSGEKGTQGPRGITGVPGPKGEAGL
PGVDGREGIPGMPGAKGSIGKAGAPGEIGPQGFPGLPGSPGPKGTSGSKGDAGQPGLPGT
MGSTGKTGERGEQGEVGPVGPIGEPGNIGQQGPLGPAGKPGARGPKGDPGLPGLPGPPGS
RGEKGERGESGEPGPKGDQGAQGDEGNPGDKGDVGDAGESGPKGEIGNLGEHGNRGPEGN
RGQPGIEGPSGTAGPRGMQGDRGAPGVRGSQGPPGKEPSDQHIKQVCMRVMQEHLAQLAA
SLRRPETGVAGLPGKPGPPGPPGTPGDSGFPGHAGARGLPGLKGPPGPLGKKGHKGELGD
RGSRGPTARGPKGQPGPPGLPGEPGKPGYGRDGRDGQRGRPGVPGQPGVPGPPGAHGLNG
YCDPSACNLQAGAAHQSLDVKGPAGN
NT seq 1701 nt   +upstreamnt  +downstreamnt
atgggtctcctggaccaccaggaccggggggggctgctgggagaaatgggaaaatccggc
ctgccgggagccatgggcgtaagaggaccccagggaccacgcggaccaacaggaccccgc
ggtgcagctggaatgctgggcagttctgacctgtgtccaaactcttgcccacctgggacc
cctggacatcctggacttcctggtatgaagggccacaaaggtgtcaaaggggacgcaggt
gaacccgggaaacaaggccacaagggcgaggagggcgagcagggcggcccgggggaggtc
ggagctcaaggaccaacgggacctcagggaatccgtggagctacaggattgatgggcccc
aaaggagagatgggtcccagaggtcttgatggagatcctggtcctcagggtgtggcaggg
gccattggagacagaggccagagaggcgtgataggtgagcctggaccttcaggtgagaag
ggcacccaagggccaagaggaatcacgggcgttccaggtccgaagggggaggctggctta
ccgggcgttgacgggcgcgagggtatacctgggatgcctggagcaaagggaagcatcggg
aaggcaggcgctcccggagagatcgggcctcaggggtttcctggtttgcctggttcacct
ggaccgaaaggcaccagtggctctaagggcgacgctggacaaccaggcctcccaggaaca
atgggatcaactggaaaaacaggtgagcgaggtgaacagggagaggtcgggcctgttgga
cctattggtgaaccgggcaacataggacagcaaggccctctgggtccagccggcaagcca
ggtgccaggggacccaaaggtgaccccggtctcccgggtctccctggtcctcctggttcg
cggggggagaaaggagagaggggagaaagtggagaaccaggacccaaaggagatcaggga
gcacaaggtgatgaagggaaccccggagacaaaggcgatgttggtgatgcaggagaatcc
ggccctaaaggagagatcggtaacctgggtgaacatggaaataggggtccggagggcaac
cgaggtcaacctggcatcgagggcccgtctggcacagccggaccacggggcatgcagggt
gacaggggtgctcctggagtcagaggctctcagggacctccaggtaaagagccaagtgat
cagcacatcaaacaagtctgcatgcgagtcatgcaagaacacctggcgcagctggctgcc
agcttgcggaggccagagaccggcgtcgcgggtttacctggaaaaccaggacctccggga
cctcctgggaccccaggtgacagcggcttccctgggcatgctggagcaagagggcttcca
ggtctgaaagggcctccaggacctctgggaaagaagggacacaaaggtgaacttggagac
agaggcagcagaggacccactgcacgaggacccaaaggtcagccgggaccccctggactt
cctggtgaaccaggcaaacctggttatggtcgggacggtcgagacggccagaggggacgt
cccggtgtccctggacagcccggcgtacccggtcctccaggtgcgcacggtctcaatggc
tactgcgacccatcggcctgcaacctccaggcaggggccgctcaccagtctctggatgtg
aaaggacctgcagggaactga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   KEGG ORTHOLOGY (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (54)   

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