KEGG T01414: TSC

Thermus scotoductus: TSC_c20030

Entry

TSC_c20030        CDS       T01414

Symbol

cshA

Name

(GenBank) DEAD-box ATP-dependent RNA helicase

K05592

ATP-dependent RNA helicase DeaD [EC:3.6.4.13]

Organism

tsc Thermus scotoductus

Pathway

tsc03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:tsc00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TSC_c20030 (cshA)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsc03019]
    TSC_c20030 (cshA)
   03009 Ribosome biogenesis [BR:tsc03009]
    TSC_c20030 (cshA)
Messenger RNA biogenesis [BR:tsc03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     TSC_c20030 (cshA)
Ribosome biogenesis [BR:tsc03009]
Prokaryotic type
  rRNA helicases
   TSC_c20030 (cshA)

SSDB

Motif

Pfam:

DEAD Helicase_C Hera_DD ResIII ERCC3_RAD25_C SNF2-rel_dom AAA_30

Other DBs

NCBI-ProteinID:

ADW22609

UniProt:

E8PN75

Position

complement(1896090..1897655)

AA seq 521 aa
MEFKDFPLKDEIKEALLRRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA
QGLEASKERGRLPRALVLTPTRELALQVSGELQAVAPHLKVVTVYGGTGYGKQKEELTRG
CDVVVATPGRALDYLRQGALDLSQVRIAVLDEADEMLSMGFEEEVEAILSATPKERQTLL
FSATLPSWARKLAERYMKSPVVINVVREEGITYQEEAIPAPGDRLSLLSDVLFVKAPKRA
IVFTRTKAETEEVATGLLRLGHPARAIHGDLSQTDRERVMRAFREGEVRVLVATDVAARG
LDIPEVDLVVHYRFPDKPETYQHRSGRTGRAGRGGEVVILYGPRERRELSELERAVGRTL
KRVNPPTPEEVLEAKWHHLLARLARVPERDYKLYQDFASRLFAEGRVEVVAALMALLLGG
APKEKSLLTGEEGWLTFKATGPRLTLPRLVALLKEAGLEVGKIAQGEEGFYVDLRPQDLP
RLSEVQGVKLERAKRVEVLPEAYAGAASRGGSPRGRRTSRF

NT seq 1566 nt +upstreamnt +downstreamnt
atggagttcaaagactttcccctgaaggacgagattaaggaagcccttttgcgccggggt
atcaccgcccccacccccatccaggcggcggccttgcccctggccctcgagggcaaggac
ctcatcggccaggcccgcacgggcaccggcaagaccctggcctttgccctgcccatcgcg
caaggcctcgaggcctccaaggagcggggccgcctccccagggccttggtgctgaccccc
acccgggagctggccctccaggtttccggggagttgcaggcggtggccccccacctcaag
gtggtcacggtgtacgggggcacgggctacggcaagcagaaggaggagcttacccggggg
tgcgatgtggtggtggccaccccggggcgggccctggactacttgcggcaaggggccttg
gacctttcccaggtgcggatcgccgtcttggacgaggccgacgagatgctctccatgggc
tttgaggaggaggtggaggccatcctctccgccacccccaaggagcgccagacccttctc
ttctccgccaccctgccctcctgggccaggaagctggcggagcggtacatgaaaagcccg
gtggtcatcaacgtggtgcgggaggagggcatcacctaccaggaggaggctattcccgcc
cctggggaccgcctttccctcctgtccgatgtcctttttgtcaaagcccctaagcgggcc
atcgtcttcacccgtaccaaggcggaaaccgaggaggtggccacggggcttcttcgcctc
gggcacccggcgcgggccatccacggggatctttcccagacggaccgggaaagggtcatg
agggcctttcgggaaggggaagtaagggttctggtggccacggatgtggccgcccggggc
ctggatatcccggaggtggacctggtggtgcactaccgcttccccgacaagccggaaacc
taccagcaccgttcggggcgcacgggcagggccgggcgggggggtgaggtggtgatcctc
tacggcccccgggaaaggcgggagctttccgagctggaaagggccgtgggccgcaccctc
aagcgggtgaatccccccacgcccgaggaagtcctcgaggccaagtggcaccatctcctg
gcccgtctggcccgggtacccgagagggactacaagctgtaccaggatttcgccagccgt
ctgttcgccgaggggcgggtggaggtggtggcggccctcatggcccttctcctgggcggg
gcacccaaggagaaaagccttcttaccggcgaggagggctggcttaccttcaaggccacg
gggcccaggctcaccctgccccggctggtggccctcttgaaggaagcgggcctcgaggtg
ggcaagatcgcccagggagaggagggcttttacgtggacctccgcccccaggacttgccg
aggctttccgaggtgcagggggtgaagctggaaagggctaagcgggtggaggttctccct
gaagcctatgcgggtgctgcctcccgggggggatcgcctcgaggccgccgcaccagccgc
ttctaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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