KEGG   Thermococcus sibiricus: TSIB_1140
Entry
TSIB_1140         CDS       T00928                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
tsi  Thermococcus sibiricus
Brite
KEGG Orthology (KO) [BR:tsi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tsi03016]
    TSIB_1140
Enzymes [BR:tsi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     TSIB_1140
Transfer RNA biogenesis [BR:tsi03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    TSIB_1140
SSDB
Motif
Pfam: LigT_PEase AKAP7_NLS 2_5_RNA_ligase2 HVSL Phi_1 DUF1327 DUF2680 TraF_2 PYRIN
Other DBs
NCBI-ProteinID: ACS90194
UniProt: C6A3J9
Position
complement(1041569..1042126)
AA seq 185 aa
MRAFIAVEINDEVRKKLVEIQEKIDRTKSAKIKFVEPENIHITLKFLGEITEEQAEDIKR
ILESIAKNHKKHEVNAKGVGVFPNYNYVRVIWAGVDNDEEIKKMAEEIDNALFQLGFKRE
KNFVSHITIGRVKFVKDKVGLMLVLKELSNEEFGKFKVEAIELKKSTLTPKGPIYETLAR
FELQD
NT seq 558 nt   +upstreamnt  +downstreamnt
atgagggcatttatagccgttgaaattaatgatgaagttagaaagaaattagttgagatt
caggagaagatagataggacgaagtctgcaaaaatcaagtttgtagaaccagaaaacatc
cacatcacgttgaaatttttgggagagataaccgaagaacaggctgaagatattaaacga
attcttgaatctatagcaaagaatcacaaaaagcatgaagtgaatgcaaaaggagtagga
gttttcccaaattataactatgtgagggtcatctgggctggagtggataacgatgaggag
ataaagaagatggcggaagaaatagacaatgcccttttccaactcgggtttaaacgagag
aagaattttgtctctcatataacaataggtagagtaaagttcgtaaaagacaaagtgggg
ctcatgttggtattaaaggagctatctaatgaagagtttgggaagtttaaagttgaggca
atagaacttaaaaagagcactcttacaccaaagggtccaatatatgagactcttgcaaga
tttgaattgcaagattag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (22)   

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