KEGG   Trichinella spiralis: Tsp_00622
Entry
Tsp_00622         CDS       T01609                                 
Name
(RefSeq) domain protein, SNF2 family
  KO
K15192  TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
tsp  Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tsp03021]
    Tsp_00622
Transcription machinery [BR:tsp03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Others
     Tsp_00622
SSDB
Motif
Pfam: SNF2-rel_dom DUF3535 Helicase_C ResIII HEAT HEAT_EZ HEAT_2
Other DBs
NCBI-GeneID: 10901906
NCBI-ProteinID: XP_003376421
Position
Unknown
AA seq 1667 aa
MAINDALLKCKNEVVRELACANLGDACVNDAAVFESLLKRIHELLVGKQWDVRESAAQAI
RQLARVSLGKWSGSASPAAASMLINNKFKFDLKNTLAQGCALLSCDESEYNCEIRESQDQ
QMRIVKQQLMIGDAVGELNVSEFLSTSDFEITSPSVENADAVAIVKKPKLDLDPVDERLV
FSCADEEGRLFLSIVCRFCETLCSDLYKPDWTVRHGAALGLRQLLTVVPFSPFHRNILKH
MFVVLALDRFSDFVGSQVVAPVRETICQAVGVVTSQAPVEMRVEFFDVVLQFLQLDTGHE
WSCRYAGLLAAKYMLIAYYGNGGGEERRSVPEKFIRALLDCLNDDNEDVVIAAAEAISGV
VEKLLETAPVFSSDLVSRCQSRLGNYINDDSNASLKGLLHILHCCPTFRVDLLSLAVYNS
FLDHSIADIRRLYLSLAVKSVEMTPATVLADNAVRILGAFLPSLFTKALVEPDEQVFAVL
RQFWCSLVEKMDPILLLKIVSSMLSYWMAMLMVPWTNPMLPKEYVGSKRCVFLGGDGVLA
LPLKERRRVVLQVKRRAAGLLAVLLKCISRVRGDEQSQELCQSVPLLFQFYLESNSVDQQ
SAACLTLCEWAAVDEEFGQFSNASLREKLHMLAETELIVYDETVGKLTQLNSLCSELESL
VGEGGESRPESSPPMIQSTMVAFSPAEAVQRCLSLMATLGQLVPVDSDLRIRGESLQEQI
LSIATDLQSTLQEVKVLTCCAGVLFGQLPPRLNPLIKPLMEYVRQSDDGCLLVDQVACCL
SLLLSLCKDRLPAPNGKIVKNLTTLLGADKRLRAHRADGTCRGCCILSRTIIGRDVGQQQ
LEQWQEEQALDMQAAANASKVLVRIVNDHQHRLAEMSTPLYDILFNPMQQQQQQQDQTDT
SVQLLTALLTIKTVYGCLEQNIRRDLCQRTVPVCCELLASNCCVLRQAVCNCLTVFAESD
LVLTLNLLLPNILPKLEKAREGLLEACLGPVEVIYCLVQSVGHQLNGVIRILASAILPKM
MVSHRTIRECACDCFGSLVQLMPLEGGEGALQGLCPELIALQKERCQFFSLLCNPTALPL
VKLPSILEGELRPYQKEGVTWLTFLKNYSLHGILSDEMGLGKTLQTLCILYMAQRMSSNN
NNNEEKVNSTNNVSLILCPKTLVKHWVAEANKFFGHCTADFYVTTLDFDNVEELEKCNVL
VASYESLRRENELLFDKHWFYCILDEGHVIRNHKTQLFKAALQIHAEHRLILTGTPVQNS
VGELWSLFEFLMPGYLGTLQQFQQRYLKPICQSRDSKATSAEAHAGKKALEDLHKQVLPF
ILRRKKVDVCRDLPPKIIQDYYCSLSPVQQELYQAYSDEVQEKVASAAVGRESRKGITFS
ILTYLRKLCSHPLLVTDSEPDLMQSTLDKLHLNDVQQLNDISYSGKMQALKQLLSECSIG
SSNLADCDAVQSNGISAHRALIFCQYKSALNLLCTFFTRGYFGKGISFLKMDGSVEPERR
QELAQQFNSDPSIDLLILTTQIGGLGLNLTGADVVIFFDHDWNPCRDIQAMDRAHRIGQT
RTVNVYRLISQGTLEEKIMRFQKFKNFMADTVIGDENKSLLSMAPDQLIDLLTLDRGAES
TACRISSNGKDRLTASTGGTTDDLESTKKQYDKAFNAAAFSKSLQQG
NT seq 5004 nt   +upstreamnt  +downstreamnt
atggctataaatgatgctttgttgaagtgtaaaaatgaagtagtgcgtgaactcgcgtgt
gcgaatcttggagacgcttgtgtgaacgatgcagccgttttcgaatcacttctgaaacgt
attcacgagttgctggttggcaagcagtgggatgtgcgtgaaagtgccgcgcaggcgatt
cgtcagttggccagagtttcgttgggcaagtggagtggttcagcttcaccagctgcagcc
agtatgcttattaacaataagttcaagttcgatttgaagaatacactggcccagggttgt
gcgcttctttcttgcgacgaaagcgagtacaattgcgaaattagggaaagccaagaccag
cagatgcgcatagtgaagcagcagttgatgattggcgacgcagtgggcgagttgaacgtg
tcggaatttttgtcgacttctgattttgaaatcacctctccgagcgtggaaaatgccgac
gctgttgccattgtgaagaagccaaagttggatttggatcccgtagatgaacggctagtg
ttcagctgtgccgatgaagagggccggttgtttttgtcgatcgtgtgtcgattttgtgaa
acactgtgctccgatttgtacaagccggattggaccgttcgtcacggggctgctttgggt
ttgaggcaactgttgaccgtggttccattttctccgttccaccggaacatcttgaagcac
atgtttgtcgttctggcgttggatcggttcagcgattttgtcggcagtcaggttgtcgct
ccggtcagggagaccatttgtcaagctgtgggtgttgtgaccagccaggcaccggtcgaa
atgcgagtcgaatttttcgacgtcgttttgcaatttttgcaactggacactggtcacgag
tggagttgtcgttacgccggtcttctggccgccaaatacatgctgatcgcttattatggc
aacggtggtggagaggagcggcggtcggttccggagaaattcattcgggctctgttggac
tgtctgaacgacgacaacgaagatgtggtgatcgcggccgcggaagcgatatccggcgtg
gtggaaaagctgctcgagacggctcctgtgttcagctcagatttggtcagcaggtgccaa
tctcgacttggcaactacatcaacgacgacagcaacgcatctctgaaaggcttgttgcac
attttgcactgttgtccaacttttcgcgtcgatttgctgtcgttggccgtttacaactcg
tttctcgaccacagcattgctgatattcgtcgcttgtacttgtcgttggcggtgaaaagt
gtggaaatgaccccggccacggtgttggcggacaatgcggtccgaattttgggcgccttt
ttgccgtcgctgttcacgaaagctttggttgaaccggacgaacaagtgttcgcggtgctt
cggcaattttggtgttcattggtcgaaaaaatggacccaattctgctgctgaaaatcgtc
tcttcgatgctcagctattggatggcaatgctgatggttccgtggacgaatccaatgctg
cccaaagaatatgtcggcagcaagcggtgcgtgtttctcggcggcgacggggtgttggct
cttccgctcaaagaacgtcgtcgtgttgtgttgcaggttaagcgtcgtgctgccggcttg
ttagctgtactgttgaagtgtatttcacgggttcgaggcgacgagcagtcgcaagagctt
tgtcaaagcgttccattgttgttccagttttatttggaatcgaattccgttgaccaacag
tcggcagcttgtttgacactgtgcgaatgggcagccgtggatgaagaatttggacaattt
tccaacgccagtttgagggaaaagttgcatatgcttgctgaaaccgagctgatcgtctac
gacgaaactgttggcaaattgactcagctcaattcattgtgttcagaattggaaagtctg
gtcggagaaggaggcgaatcacggccagaatcttctcctccaatgatccaatcgaccatg
gttgctttttcgccggccgaagctgttcaacgttgtctcagtctgatggcaactttgggt
cagttggttccggtcgattcggacctgcggattcgaggcgaaagtttgcaagagcagatc
ttgtccatcgccaccgacttgcagagcacgttgcaagaagtgaaagtgttgacttgctgc
gctggagtgctgttcggccaactgccgccgcggttgaatccgttgatcaaaccgctgatg
gaatatgtacgccagtcagatgacggatgtttgttggtcgaccaggttgcttgttgtttg
tcgttgttgttgtcgctttgcaaagaccgactgccggctccgaatgggaaaattgtcaaa
aatttgaccacactgctcggtgccgacaagcggcttcgtgcccaccgcgccgacggtact
tgtcgaggctgttgtattttgagtagaacaattattggacgggatgttggccaacagcag
ttggaacaatggcaagaggaacaggctctggatatgcaggccgctgccaacgcgtcgaaa
gtgctcgttcgtattgtcaacgatcaccagcatcgactggccgaaatgtcgacaccgctt
tacgatattctattcaatcccatgcagcagcagcagcaacaacaggaccaaaccgacact
tcggttcaattgttaactgcacttttgacaataaaaaccgtctatggatgtttggaacag
aatattcgtcgagatttgtgccaaagaacggtaccagtgtgctgtgaattgttggcgtcg
aattgttgcgtgctccggcaggcggtttgcaactgtttgacagtattcgcagagtcagat
ttagttttgacgttgaatttactgttgccgaacatcttgcccaagttggaaaaagctcga
gaaggattattggaagcttgtcttggaccggtcgaagtgatctattgcctggtccaaagt
gtgggccaccagttgaacggggtgattcgcattttggcttctgcaattttgccgaagatg
atggtttcacaccgtacgatcagggaatgtgcgtgcgattgtttcggttcattggtgcaa
ttgatgccgttggaaggcggtgaaggggcattgcagggtctttgtccagaattgatcgcc
ttgcaaaaagagcggtgtcagtttttttctcttctgtgcaatccaacggctttaccactg
gtgaaattgccgtcgattctcgaaggcgaactgagaccgtatcaaaaagaaggtgtgaca
tggttgacttttttgaaaaattattccctgcacggaattttgtcggacgagatgggtttg
ggcaaaacattgcagacgttgtgcattttgtacatggctcagcggatgagcagcaacaac
aacaacaacgaggagaaggtgaattcgacaaacaacgtgtctttgatactttgtccgaaa
acgttggtgaagcactgggtagcggaagcgaacaaatttttcggccattgcacggccgat
ttctacgtcactacgttggactttgacaatgtggaggaattggaaaaatgcaacgtactt
gttgcttcgtacgaaagtttgagacgtgaaaatgaactactgtttgacaagcattggttc
tattgtattcttgatgaaggacatgtgattcgtaatcacaaaacgcaactttttaaagct
gctttgcaaatccacgcagaacatcgattgatactgaccggcacgccggttcagaacagt
gtcggcgaattgtggtcactgttcgaatttctaatgccgggctatttgggcacgttgcaa
caatttcaacagcgttatttgaaaccaatatgccaaagtcgagattccaaagcaacgtca
gccgaagcgcatgctgggaaaaaagcgctcgaagatctccacaagcaggtgctgccgttt
attttgagaagaaaaaaggtggatgtttgtcgtgatttgccgccgaaaattatacaagat
tattactgttctctgtcaccagtgcaacaagaattgtaccaagcgtattcggatgaagta
caagagaaagttgcatcggctgctgttggaagagaatcgagaaaagggatcacattttcc
attctcacctatttgagaaaattgtgcagtcatccacttttggtcaccgacagcgaacct
gacctcatgcagtcgactttggacaagctccatttgaacgatgttcaacaattgaacgat
atcagctattctggcaaaatgcaagcactgaagcaacttttgtccgaatgtagcatcggc
agttcaaatttggcagactgtgatgcagtgcaatccaatggaataagtgcacaccgagcg
ttgatattttgtcagtacaaaagtgcgttgaatttgttgtgcactttcttcacccgagga
tactttggcaagggtatatcgtttttgaaaatggacggttcagtggaaccggaacgtcga
caagagctggcgcagcagttcaattcagatccgtcgatcgatttgttaattttgaccaca
caaattggcggtttgggattgaatttgaccggggcggatgtggtgatatttttcgaccac
gactggaatccgtgtcgggatattcaggcgatggaccgagcccaccgtattggtcaaacg
agaactgtgaacgtttaccggctgatcagccaagggactttggaagagaaaattatgcga
tttcagaagttcaaaaatttcatggccgacacggtgatcggcgacgagaacaaatcccta
ctatccatggctccggatcagttgatcgatctgttaacactggacagaggggcagagtcg
acggcatgtcgaatatcatcaaatggaaaggatcgcctgaccgcgtcaacaggtggtacc
acggatgatttggaatcgactaaaaaacaatacgacaaagcattcaatgcagctgcattt
agcaaatctcttcaacaaggctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (51)   
   KEGG ORTHOLOGY (1)   
   RefGene (47)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (63)   

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