KEGG   Trichinella spiralis: Tsp_02632
Entry
Tsp_02632         CDS       T01609                                 
Name
(RefSeq) putative ATP-dependent RNA helicase Pl10
  KO
K11594  ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
Organism
tsp  Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsp03019]
    Tsp_02632
   03041 Spliceosome [BR:tsp03041]
    Tsp_02632
   03036 Chromosome and associated proteins [BR:tsp03036]
    Tsp_02632
Enzymes [BR:tsp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Tsp_02632
Messenger RNA biogenesis [BR:tsp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     Tsp_02632
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     Tsp_02632
Spliceosome [BR:tsp03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    Tsp_02632
Chromosome and associated proteins [BR:tsp03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    Tsp_02632
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 10899087
NCBI-ProteinID: XP_003378958
Position
Unknown
AA seq 552 aa
MDSMANWQCGGPQPPKNYSRGYGRMPDNRGNFYPPNQYDSMPPGGNRNMRRKELFGSGNT
GINFDKYEEIAVEATGQNVPACIQKFSELNLHPWIMDNIRLCHYDKPTPVQKFAIPTALE
NRDLMACAQTGSGKTAAFLLPILHHILSGGPEMLRKSDTAPNGRRRLYPAALVLAPTREL
TLQIFNEACKFSYRTPIMSTILYGGRENYRDQINKLRIGCHLLVATPGRLNDVMNQGYIG
LDACRFLVLDEADRMLDMGFEPQIRQIVEMSGMPRRSHRQTMMFSATFPHEIQMLAQDFL
VPDYVFLAVGRVGSTSENITQKLVWVEDYDKRAFLLDLLNASSPETLTLIFVETKRGAAD
LAYFLSGERYSVVAIHGDLKQFEREQHLESFRSGNTPILVATAVAARGLDIPNVKHVINY
DLPSEIDEYVHRIGRTGRVGNIGLATTFFNNKNKNMARDLAELLVEANQELPDFLERMAR
ENPRGTQHGNRSRNQRNFGGRDFRDQYRSGGGNAAMHNARAFIADGSAKARKCRRTLEAA
NIFTFICIYLYA
NT seq 1659 nt   +upstreamnt  +downstreamnt
atggattcgatggcaaattggcaatgtggaggaccgcaaccacccaagaattattctcgt
ggttatgggcgaatgccagataatagaggaaatttttatcccccgaatcagtacgacagc
atgcctccaggtggaaataggaatatgagacgcaaagaattgtttggaagtggaaatact
ggcattaattttgataagtatgaagaaattgcagttgaagcaactggtcagaatgttccg
gcatgcattcagaagtttagcgaactgaatttgcatccgtggataatggacaatattcgt
ctttgtcactacgacaaacctactccggtgcagaaatttgcaattcctactgctctggaa
aacagagatctaatggcctgtgctcagacaggttctggaaagacagctgcttttttattg
ccaattttgcatcatattttgtccggaggaccagaaatgcttcgcaagtctgatacagcc
cctaacggtcgtcgccgtttatatccagccgcgttagtgttagcacctacacgtgaattg
actttgcaaatcttcaacgaagcttgtaaattctcttatcgcactccaataatgtctaca
atattgtatggtggtcgagaaaattacagagatcaaataaataaattaaggattggttgt
catttgctcgtagcaactccaggtcgtttgaatgacgttatgaaccaaggctatattggc
ttggacgcttgccgatttttagttttggacgaagcggaccgcatgctcgatatgggcttt
gaaccacaaattcgtcagattgtagaaatgagtggcatgcccaggcgatcgcatcgtcag
acgatgatgttcagcgcaacatttccgcatgaaattcaaatgttggcacaagattttctt
gttcctgattatgtgtttttggccgttggtcgagttggttctacatcggaaaatataacg
cagaaattggtctgggtggaagattatgacaaacgagcgtttctgttggatttgttgaat
gcatccagtccggagacgttaacgctgatatttgtggagacaaagcgtggcgccgcagat
ttggcttattttttgagtggagaacggtacagtgttgttgcaattcatggtgatttgaaa
caattcgaacgtgaacaacatctcgaatcttttcgctctggaaatacgccaattctagtt
gcaactgctgttgcagctcgtggtttggacataccgaatgtaaagcacgtgatcaattac
gatttgccttcagaaattgatgaatacgttcatcgcattggccgtactgggcgtgtaggg
aacataggtctggcgaccacctttttcaacaataaaaacaaaaatatggctcgagatctg
gctgaactgttggtagaagcaaatcaagagttgccagattttctggaacgaatggctcgt
gagaatccacgtggtacgcagcatggaaatcgtagtcgaaatcaaagaaatttcggcggt
cgggactttcgagaccagtatcgttctggtggcggcaatgcagcaatgcacaatgctcgt
gcatttattgccgacggaagtgcaaaagcgagaaagtgtagaagaacactggaagcagct
aatatatttacgtttatatgtatttatttgtatgcgtag

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Ontology (5)   
   KEGG BRITE (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (40)   

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