KEGG   Trichinella spiralis: Tsp_03075
Entry
Tsp_03075         CDS       T01609                                 
Name
(RefSeq) CRM1 C family protein
  KO
K14290  exportin-1
Organism
tsp  Trichinella spiralis
Pathway
tsp03008  Ribosome biogenesis in eukaryotes
tsp03013  Nucleocytoplasmic transport
tsp03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    Tsp_03075
   03008 Ribosome biogenesis in eukaryotes
    Tsp_03075
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    Tsp_03075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsp03019]
    Tsp_03075
   03009 Ribosome biogenesis [BR:tsp03009]
    Tsp_03075
   03016 Transfer RNA biogenesis [BR:tsp03016]
    Tsp_03075
   03036 Chromosome and associated proteins [BR:tsp03036]
    Tsp_03075
Messenger RNA biogenesis [BR:tsp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     Tsp_03075
Ribosome biogenesis [BR:tsp03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    Tsp_03075
  Pre-60S particles
    Tsp_03075
Transfer RNA biogenesis [BR:tsp03016]
 Eukaryotic type
  tRNA transport factors
   tRNA export factors
    Tsp_03075
Chromosome and associated proteins [BR:tsp03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     Tsp_03075
SSDB
Motif
Pfam: CRM1_C Xpo1 CRM1_repeat_2 CRM1_repeat_3 CRM1_repeat IBN_N Laa1_Sip1_HTR5 DUF4504
Other DBs
NCBI-GeneID: 10900353
NCBI-ProteinID: XP_003379413
UniProt: E5S2L2
Position
Unknown
AA seq 1119 aa
MAEEILVKASKLLEFNTPVIDVSLLDAVINLMYCGTGEIQRKAQEILTMLKENNEAWTRV
DAVLEYSRSLQSKYFALQILENLVNTRWRRLPRDQCDGIKKYLVDRIISISSNPSLSEDE
KVFLNKMNMVLVQIVKREWPKHWPTFISDIVGSSRSNESLCRNNMVILKLLSEEVFDFSS
GQMTQTKANHMKQQFCSEFRAIFELCQHILESSTNVMLVEATLNTLLGFLVWIPVGYIFE
TNLIESLTAKFLSILPFRNVTLMCLTEIAGVTFPKNAPPAYSSTICRLFSRTMQQLNTVR
LNMLPPHTNIPEAYAMGNDNDQKCISNLALFLSTILRQHCKIIEAECKEKIGELLGTPFD
LAMNYLLAISEVDDMEVFKICLDYWNWLVAELYREPPLTNPLLTMNLAIQLIRKDSLCTR
YHYVPYLSRLRSVIISRMAKPEEVLVVENDEGEVVRETIMDTDAISLYRTMRETLVYLTH
LDCADTERIMTEKLQNQTNGSEWSWKNLNCLCWAIGSISGALMEEDEKRFLVMVIRDLLG
LCEQKRGKENKAVIASNIMYVVGQYPRFLRAHWKFLKTVINKLFEFMHETHEGVQDMACD
TFIKIANKCRRHFVIIQAGEKEPFIEEILASLNTIICDLSPAQVHVFYEAVGYTISAQPV
QIVRDNLIERLMSLPNHTWDDVILKATTNVEILKDIEVVKNLVNILKTNSAACRSIGYPF
LPQLCRIYLDMLNVYKVTSENINSAVTLHGESVLKQPLIKCMRAVKTEVLRLINTWISTL
SSISESARIPELPSIYMSFVPPLFDTVLFDYQRNVPSAREPEVLSACTVLITQMKEKVSE
DVPKILDALFGCTLEMINKDFEDFPEHRINFFQFIRSIIVNCFTGNIEELKKKPLMLIPP
AQFTLIVDAIVWAFKHTTRNITEIGLEILDRLLDSFSTKVSPDMAQSFYQQYYLTILSHL
LSVVTDSTMAQVAGLTVFAVTLGRMFRELEEGLIKVPLQGPGQVKSNVEYVLEYTFELLK
KAFPHLTDEQVRIIVQGILSYDNDVEKLKEHLRDFLVQIKEYTGEDTSDLYLAEKEQEVK
AAMEAKRRAAEAVPGILNPHEISEEMIEEPMGNGPALNA
NT seq 3360 nt   +upstreamnt  +downstreamnt
atggcagaagaaatattagtaaaagctagcaaattgttggaatttaacactccggtcatt
gacgtctcacttcttgatgcggttattaatttgatgtattgcggtacaggagaaatacaa
agaaaagctcaagagattttaactatgttgaaagaaaacaacgaagcttggactagagta
gatgctgtattggaatattcgagaagtttacagtcaaagtactttgctttgcaaatctta
gaaaaccttgtcaatactcgttggcgtcgccttccccgcgatcagtgtgatggtatcaaa
aagtatttagtcgatcgcattattagtatatcttccaatcctagtctttctgaagatgaa
aaagtatttctgaacaagatgaacatggtattggtgcagatcgttaaacgggaatggcca
aaacactggcctacgtttatcagtgatattgttgggtccagtcgttccaatgaatcattg
tgtcgaaataatatggtgatcctgaaattgttaagtgaagaagtttttgatttttcttct
ggtcagatgacacagacgaaggcaaatcacatgaaacagcagttttgctctgaatttcgt
gcaattttcgagctatgtcagcatattttggagagttcgaccaatgttatgctggttgaa
gccacgttgaacacattgctcggcttcttagtttggattcctgttggttacatatttgaa
acgaacttgatcgaaagtcttactgcgaagtttctaagcatcctgccgtttcgtaatgtc
actttgatgtgcctgacagagattgcgggtgttacttttccgaaaaatgcgcccccggct
tattcttctacaatatgccgactgttttctcgaacgatgcagcagttgaatactgtacgt
ttgaatatgctcccaccgcatacaaacattccagaagcttatgcgatgggtaatgacaat
gaccaaaaatgcatctcaaatctcgctctgtttttgtctacgatcttgcggcagcattgc
aagattattgaagctgaatgcaaagaaaaaattggagagttgttgggcacaccttttgat
ttggcaatgaattatttgttggcaataagcgaagtcgacgatatggaagtattcaaaata
tgcctcgattattggaattggctagttgctgaactgtatcgagaaccgcccttaacgaat
cctctgctaaccatgaaccttgctattcagttgattcgaaaagattcactgtgcactcgt
tatcattatgtcccatacttgagtcgactgcgcagtgtgattatcagtcgtatggcgaag
cccgaagaagttttggttgttgaaaacgatgaaggcgaagttgtacgtgagacgatcatg
gatacagacgcaataagcctttacagaaccatgcgagaaacgttggtatatttgactcac
ttggactgtgccgatacggagagaataatgactgaaaagttgcaaaatcaaaccaacggg
tctgagtggtcttggaaaaatttaaactgtctttgttgggcaattggatcgatcagtggt
gctttaatggaagaggacgagaagcgttttctagttatggttattcgcgatttgcttggt
ttgtgcgagcagaaacgtggaaaagagaacaaagctgtgattgcgtcgaatataatgtac
gttgttggacagtatccaagatttctcagagctcattggaaatttttgaaaactgtcatt
aacaaactttttgaattcatgcacgaaacacacgaaggtgtacaagatatggcctgcgac
acgttcattaaaattgctaacaaatgtcgacgtcattttgtcattattcaagctggagaa
aaggagccgtttattgaggaaattttggcctctttgaacacaatcatttgtgatttgtct
ccggctcaggtacatgtgttttatgaagcggtcggttataccatcagcgcgcaacctgta
caaattgtccgggacaatttgatcgaacgtttgatgtctctgccgaatcacacatgggat
gatgttattctcaaagcgacaacgaatgtggaaattttgaaagacattgaagttgtcaaa
aacctggtgaacattttgaaaacgaacagcgccgcctgcaggtcaattggttatccattt
ctcccacagctctgtcgtatctacttggatatgttgaatgtttacaaggtcacgtcggaa
aatattaattccgcagtaacattgcatggcgaatctgtactgaaacagcctttgatcaaa
tgtatgcgcgctgtgaaaacggaggtgctacgtttgattaatacttggatatccactctc
agcagcatcagcgaatctgctcgaattcctgagctgccatcgatatacatgagttttgtt
cctccactttttgacactgttttattcgattaccagcgcaacgttccctctgcccgtgaa
ccggaagtgctgtccgcttgcacagtgcttatcacgcagatgaaggaaaaagtttctgaa
gatgtaccgaaaattttggatgcattatttggctgtactcttgagatgatcaataaggac
tttgaagacttccctgaacacaggattaattttttccagtttattcgttccataattgtt
aactgttttactggtaatattgaagaattgaagaaaaaaccgctgatgttgattccaccg
gcccagttcactctgatcgttgacgcgattgtttgggcatttaaacataccacccgtaat
attactgaaattggtttggaaattttggatcgtcttttggatagtttctctactaaagtc
agtccagatatggctcaaagcttttaccagcagtactatttgaccatactgagccatctg
ttgtcagttgttacagacagcacaatggcacaagttgctggtctgacagtttttgctgta
acacttggcagaatgttccgtgaattggaggaaggcttaatcaaagtacccctacaagga
cctggtcaagtgaagtcaaacgttgagtacgttttggagtatacattcgaattgctgaaa
aaggcttttccacatttgacagatgaacaagtgcgcatcattgtgcaaggaattttgagc
tacgataatgatgttgagaaattgaaagaacatctgcgtgattttcttgttcaaatcaaa
gaatacactggcgaggatacatcagatttatatttggcggaaaaagagcaagaagtaaaa
gcggcaatggaagcgaaacgccgagcagctgaagcggtgcctggcatattgaatccgcat
gaaatttctgaagagatgatcgaagagccgatgggaaatggccctgctttaaatgcttga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (46)   

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