KEGG   Trichinella spiralis: Tsp_06456
Entry
Tsp_06456         CDS       T01609                                 
Name
(RefSeq) transportin-1
  KO
K18752  transportin-1
Organism
tsp  Trichinella spiralis
Pathway
tsp03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    Tsp_06456
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsp03019]
    Tsp_06456
   03009 Ribosome biogenesis [BR:tsp03009]
    Tsp_06456
Messenger RNA biogenesis [BR:tsp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     Tsp_06456
Ribosome biogenesis [BR:tsp03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    Tsp_06456
  Pre-60S particles
    Tsp_06456
SSDB
Motif
Pfam: IBN_N CEP104-like_TOG Cnd1 Xpo1 HEAT_EZ HEAT
Other DBs
NCBI-GeneID: 10908888
NCBI-ProteinID: XP_003378481
Position
Unknown
AA seq 756 aa
MAVEMSAAEFQPQADELAQVLELLKQSQISDNAVQREVQKKLEELKKIPTFSYYLLYVLT
RMTDEQQVTRSLGGLILKNNIHAAWSTYTDEAKRYVKAECVHALGESNQMVRTTVDVVIA
SILSQESIHAWPDLVVKLLDQLHSDQDQVVVGAFSVVQKICEDSAFYQVEDREYALRTLM
PALVGLLLHQNVKVRLMCLQSVNFFLGIRSPFLDHFIDDRFLARLFNCMNDSEQSIHDCL
CQALSLLCNLYFNKLTNYMPTVARYILHRTSDSVEHTALEACEFWLTLAEEPANCREVVR
PYLAELIPVLVRRMRYSEQDLRNMKADLECDELIPDRTEDIQPRFRRSKPQQQQQDANSM
SNVDDGINNIHSSNRQWMRFFGRRVVRMERTQRIRGNVGRAVERVQRRAASAFVANFGRR
SVPTGLAGQRGGHIGVGRRGRRLRERHGTPLAHSGPLFDRLFERFESVGQVDHLLDVESL
WSLDIAISERTPFRTVAQRTVGSAVGREQASPGGGVQRVRHAGRGGEFRTGPIFERSGAD
VVRRVRKIPGEKFAHTVRRGRHAGRIDRHLSRQTGAGRRADAAPDGQMEPHRRHRTGTLF
AVGMHGQRGGRVAGQFSPLFHVGIFALCPLDQLQRRNGNGRFDARLRLWIGIRQHRLGPV
DPGCRSRRPGFRDRVVGLAQRHGRNARPAAHQSGRPLQFGRIGQADVARPVVRSETEFVR
VGRRFGAHLLATCRTARHVLFDRSGTQFGTAPSVGL
NT seq 2271 nt   +upstreamnt  +downstreamnt
atggctgtggaaatgagcgcggcagagtttcaacctcaagccgacgaactggcccaagtg
ttggaattgctgaagcagtctcagatcagcgacaatgccgtccagcgagaagttcagaag
aagttggaagagttgaagaagattccgacgttttcctattatttgttgtacgtgttgacc
agaatgaccgacgagcagcaggtgacccgctcgttgggcggtctgatattaaaaaacaat
atccacgccgcttggtcgacttacaccgacgaggcgaaacgctacgtgaaagccgaatgc
gtgcacgcgttgggcgaaagcaaccaaatggttcgcactacggtcgacgtggtcattgcg
agcatcctgagtcaggagagtatacacgcttggccggatcttgtggtcaaattgctcgac
cagctccacagcgaccaggatcaggtcgtggtcggcgcgttcagtgtggtgcagaaaata
tgcgaagacagcgccttctaccaggtcgaggaccgcgaatacgcgctgcgcaccttgatg
ccggctctggtggggctgctgttgcaccagaacgtgaaagttcgcctgatgtgcttgcag
tcggtgaactttttcctcggcatacggagtccatttttggaccacttcatcgacgaccgt
tttctggctcgcctgttcaactgcatgaacgattcggaacagtccattcacgattgcctg
tgtcaggcgttgtcgttgctttgcaatttgtacttcaacaagctgaccaactacatgccc
accgtggcccgctacatactgcacaggaccagcgattcggtcgaacacaccgccctggag
gcgtgcgaattttggctcacgctggccgaagagccggccaattgccgcgaagtggtcagg
ccttatttggcggaattgattcctgttcttgtgcgacggatgcgctattcggaacaagat
ttgcgcaacatgaaagccgacttggaatgcgacgaactaatcccagaccgtaccgaagat
attcagccgagatttcgtcggtccaagccacaacaacaacaacaagatgcgaattccatg
tccaacgtggacgatggaattaataatattcacagcagtaaccgtcagtggatgcgattt
ttcggtcgacgcgtcgtcagaatggaacgtacgcaaaggatccgcggcaacgttggacgt
gctgtcgaacgtgttcagagacgagctgcttccgcatttgttgccaattttggacggcga
tctgttccaacaggactggctggtcaaagaggcggccatattggcgttgggcgccgtggc
cgaaggctgcgcgaacggcatggcaccccacttgcccactctggtcccctatttgatcgg
ttgtttgaacgattcgaaagcgttggtcaggtcgatcacttgttggacgttgagtcgtta
tggtcattggatattgcaatttccgaacgaacgccatttcgaacagttgctcaaagaact
gttgggtcggctgttggacgtgaacaagcgagtccaggaggcggcgtgcagcgcgttcgc
cacgctggaagaggaggcgaatttcgaactggtcccatatttgaacgaagtggtgcagac
gttgtgcgccgcgttcgaaaaataccaggcgaaaaatttgctcatactgtacgacgcggt
cggcacgctggccgaatcgatcggcacttgtctcgccaaaccggagctggtcgacgcgct
gatgccgcccctgatggccaaatggaaccgcaccgacgacaccgaacgggaacgctattc
gctgttggaatgcatggccagcgtggtggtcgcgttgcaggacaattttctcccctattc
cacgtcggtattttcgcgctgtgtccacttgatcagttgcaacgtcgaaacggcaacggc
cgatttgatgctcggctccggctctggatcgggatccgacaacatcgtctcggtcccgtc
gacccagggtgtcgaagtcggcggccaggatttcgtgatcgcgtcgttggacttgctcag
cggcatggtcgaaacgctcggccagcagctcatcagtctggtcgcccattacaatttggt
cgaattggtcaagcggacgtcgctcgaccagtcgtccgaagtgagacagagttcgttcgc
gttggtcggcgatttggcgcgcacctgctggccacttgtcgaaccgcacgtcatgtactt
tttgaccgttctgggacgcaatttggaaccgcaccaagtgtcggtctgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (37)   

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