KEGG   Trichinella spiralis: Tsp_07461
Entry
Tsp_07461         CDS       T01609                                 
Name
(RefSeq) hypothetical protein
  KO
K12879  THO complex subunit 2
Organism
tsp  Trichinella spiralis
Pathway
tsp03013  Nucleocytoplasmic transport
tsp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Tsp_07461
  09122 Translation
   03013 Nucleocytoplasmic transport
    Tsp_07461
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsp03019]
    Tsp_07461
   03041 Spliceosome [BR:tsp03041]
    Tsp_07461
Messenger RNA biogenesis [BR:tsp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     Tsp_07461
Spliceosome [BR:tsp03041]
 Complex C
  Other components
   EJC/TREX
    Tsp_07461
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    Tsp_07461
SSDB
Motif
Pfam: Tho2
Other DBs
NCBI-GeneID: 10898662
NCBI-ProteinID: XP_003381772
Position
Unknown
AA seq 1140 aa
MCSSAVHHTHLHNRTLGQARKAEVESFTRDHFVVASEFGHFVTNQLKRGTSLDLLVLGEI
VKNMSGVETARNLTKDQIETYAGGDILKSEVGHLSQMRNMRRSVHRLKDSLLQDDLAVTL
CILIAQQRKVIVFKDGAKVHLKLAGQMLDQCHETFIQFAHFLMANVEIEEYTRRMPLADE
LMQLYNLDCSSAMFLTRPAYNYKIREKFQELIKAEKAGQQLEDSKKIQYYISACEEIYLP
LQSKMKQLSEPEMRPELTSKFFVTFWTLSLYDLFVPTKAYQTAIDGIRKSIEQLENCREL
TESKRRKEKERFLQQESKLLQEQQTHLEHVSLVKARLMSESSRWFSSRSPRTALVSQMVQ
ACLFPRCVFHEADAFYCVKFIEMCHLFKTPNFPTLIFWDLSSAVACLSEYEASCYGRFIC
EMLELLMSWHSDREKFNQASKPFSNECANHPGFVTRTKAVAGSNNDHSRDFVDYESFRHV
LNKWHYKITRAVLICLTSDSFILIRNILLILMKILPYFPLLHNLMLTIEKRVIDVRDREK
DKRQDLHVLAASYWGHLKLRKDHMFAEEDFHAVNVKERATDCLELFEVSAIIDDEEFFLK
VNDSSSSANREVKVEDNNSATPLPNEAKKPVSSKSSSIKNSGQDTTSAVSKSSNSSSVKS
VATKTDTDKVSEDAGMSTLKNSSADTELPPETMQQQSLQPGPAKVPRLEVAESGGPVEPA
PLPKHRSSNVAKAAVGASGASTKESTTVRGVHPHHHQPQQQQQATTNRLKHKDAVVEQQQ
SSSCSTSVGTSATTRTTTTTTTTTTTTSGGRQGSTRKTSLRAPDVSSGASSTAAETSASS
LLNDSSNLGSNCITPAEKSNRNDNITSVDSSATKIDGEQQRQQNNAASTFEDTKSKTDRH
SSSAATAGHSKNSNIPPLTLESSGRKVTASSSSSTAVAKSSYHQDDRRNGNKEPEHGSAA
HKSRRKGGSVNESGMPDVLFSTLKRSPDLKRSSPSSSSSRRKKNPQRYKEKERTDTYVEF
DSAMIDSKKEARKERFAEPVDWRNKDYRYMSSAPVSRMSSFHAGNEPKTMKMVRLSQATS
RSVSPHQAGEDDDRAVLQLFFVVGLFIILDWHSAFVPIHFHHSNLTQQHHIHNMHIGGDG
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtgctcttcagctgtacaccacacgcatttgcataatcgaacacttggccaggcccga
aaagcagaagttgaaagtttcacacgcgaccatttcgtcgtggcttcagagtttggccac
tttgtcactaatcagttgaagcgtggtacaagcttggatttgcttgtacttggcgaaatt
gtgaaaaatatgagcggcgtcgagacggcgcgaaatttgaccaaagatcagattgaaacc
tacgccggcggtgatatcttaaaatccgaagttggccatttgagtcagatgcgcaacatg
aggcgttctgttcatcgcctgaaagattcattacttcaagacgatctggccgttactctt
tgtattctcatagctcagcagcgcaaagtgatcgtttttaaagatggcgcgaaagttcat
ttaaaattagcaggacaaatgcttgatcaatgccacgaaacgtttattcaatttgctcac
tttttgatggctaatgttgaaattgaagagtacacgagacgtatgccattggcagacgaa
ctgatgcaattgtacaatttggattgttcatcggcgatgttcctcactcgacctgcttac
aattacaagattcgagaaaaattccaagagctgatcaaagcggagaaggcaggacagcag
ttggaagattcgaaaaaaatacaatattacatatctgcatgcgaagaaatatatttgcct
cttcaaagtaagatgaagcaactttcagagccggaaatgcgaccagagttgacatcaaaa
ttttttgtcacattttggactttgagcttgtacgatttatttgtgccgaccaaagcctat
cagactgcaatagatggtattcgcaaatctatagaacaattggaaaattgcagagagttg
acggagtcgaaacggcgtaaagagaaggaaagatttttgcaacaggaaagcaaattgctc
caagagcagcagactcacttggagcacgtctcgttggttaaggctcgactaatgtccgaa
agttctcgctggtttagttcaagatctccaagaaccgctctggtgtcgcagatggttcaa
gcatgccttttcccaaggtgtgtctttcacgaagccgacgcgttttattgtgtcaaattt
atcgaaatgtgccatttattcaaaacaccgaattttccaactttgattttttgggatctt
tcaagtgcggtcgcctgtttgtcagaatatgaagcaagttgctatggcaggttcatatgt
gagatgcttgaattgttgatgtcttggcattcggatcgtgagaaatttaatcaggcaagc
aagccattctccaatgaatgtgccaatcatcctggattcgtcacacgtactaaagctgtt
gccgggtcgaataatgaccatagccgtgattttgttgattatgaaagttttcgacatgtt
ttgaacaaatggcactacaaaattaccagagctgttttaatatgtttaacatcagattca
tttatcctgattcgaaacattttattaatattaatgaaaatcttaccgtattttccgctt
ttgcacaatttaatgctgacaattgaaaagcgtgtgattgacgttcgagatcgagaaaag
gataaaagacaagatttgcacgttttagctgcgagctattggggtcatttgaaattgcga
aaagatcatatgtttgccgaagaggactttcacgcggtgaatgtcaaagagcgagctact
gattgtttggaattgtttgaagtgagtgcaataattgatgatgaagaattctttttgaaa
gtgaacgacagttcatcgtctgcaaatcgtgaagtaaaagtggaagataataattctgcc
actccgcttccgaatgaagcgaaaaaacccgttagctcgaagagtagtagcattaagaat
tctgggcaagatactacttctgcagtatcgaagagttcaaattcatcatcggtaaagtcg
gtcgcaacgaagacggatacggataaagtttccgaggatgctggcatgtcgacgttgaaa
aattcctctgcggatacggaactaccgccggaaacgatgcaacaacaatcgttgcagcca
ggtcccgccaaggtgccacgtcttgaagtcgccgagagcggcggtccagttgagccagct
ccgttgcctaagcatcgttcctcgaatgttgccaaagcggctgtcggtgcgtccggcgcc
tcgaccaaagaatcgaccacggtccggggtgtacatcctcatcatcatcaaccgcaacag
cagcagcaagcaacgacgaatcggttgaaacataaagatgccgttgttgagcaacagcag
agcagcagctgttccacctccgttggcacttcggcgacaacgcgaaccaccaccaccacc
accactaccaccaccaccactagtggtggccgtcaggggtcgacgagaaaaacctcattg
cgtgcaccggatgtgagcagcggcgcttcgtcaactgccgctgaaacgagcgcctcgtca
ttgttgaatgattcatcgaacctcggttcgaattgcataacgccggcagagaaatccaac
cgcaacgacaacatcacctcggtcgacagttcggctacgaaaattgacggagagcaacag
cggcagcagaataatgccgcttcaacgttcgaggacacgaaaagcaaaaccgaccgtcac
tcgtcgtccgcggccaccgctggtcattcgaaaaacagcaacatcccgccgttgacgttg
gaaagcagtggcagaaaagtgacggcgagttcgtcgtcatcgaccgcagtggcaaagtcc
tcctaccaccaagatgaccgtcgcaacggaaacaaagagcctgaacacggtagcgcagcg
cacaaatccaggcgaaagggcggttccgtcaacgagtcgggtatgccggatgttttgttt
tcgacattgaaaagatcgccagatttgaaacgctcatcgccttcttcttcttcttctcgt
cgtaaaaagaatccccagcggtacaaggaaaaagaacgaacagacacgtatgttgaattt
gacagcgccatgattgattcaaaaaaagaggcaaggaaggaacgctttgccgaacccgtc
gactggcgtaacaaagattaccgctatatgtcgtcggcacccgtttctaggatgtcatca
tttcacgctggaaatgagccgaagacgatgaaaatggttcgtctgtcgcaggctacgtca
cggtcagtttcgcctcatcaagccggcgaagatgatgatcgagcagttttgcaactgttt
tttgttgttggtctatttatcattttagattggcattccgcttttgttccaatacatttt
caccattcaaatctcacacaacagcaccatatacataatatgcatattggtggtgatgga
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (47)   

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