KEGG   Trichinella spiralis: Tsp_08935
Entry
Tsp_08935         CDS       T01609                                 
Name
(RefSeq) putative tetratricopeptide repeat-containing domain protein
  KO
K12600  superkiller protein 3
Organism
tsp  Trichinella spiralis
Pathway
tsp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Tsp_08935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsp03019]
    Tsp_08935
Messenger RNA biogenesis [BR:tsp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     Tsp_08935
SSDB
Motif
Pfam: TPR_1 TPR_2 TPR_12 TPR_8 TPR_17 TPR_14 TPR_11 TPR_19 TPR_16 TPR_6 ANAPC3 Fis1_TPR_C
Other DBs
NCBI-GeneID: 10902480
NCBI-ProteinID: XP_003382077
Position
Unknown
AA seq 1071 aa
MKVPKNKDKKTKKQNKNTCNKNTTKGRSKGVSICEDAAESSAKNQQNVVIDQPSRVMDPK
EEKALLKDAKAKYQEKEYNKCLEICKYKRNYKFNHKTILNCNTKCYFGFLFSGLCYIFLN
NYTEAKKFLKAALEIEPDNVNAWKGLEMYYETFNFNDILHVEVLRKLIQVEKENRKKLTL
KLFKSLVDLGKREEALSELFAYLGDVNDELEVFDSYEIMLKKHLVSTDAQLKYAEFCQKK
ALIEGLALTKMTENKDLAFLIQVFKLIGHIYIDINSDEIDIDMSVMDECEEYLFNNFDHM
QAHSGDIGWAFMTLVDGLREIDTFNYDRAAEILNTIFRGVGLKGMHGDCRDSNTVDYGEE
KYIPYRFEIGFFLIVAYVHKHDYLNAQLVAEEMVKLNLGMDSRPRYYILRLRLAEIYREL
QWNYEQAKEYCLELLAQIHLPFSERTVQRARICLALLLAQEGDVARGLELLAQDETGYEI
HCARAECYLRMEKLQEALAEATAAMDQNDDDDAQAHYLMGETLRSIGQDPAVALKELLQA
CKLNAYHAPSFFSLGQLLWLTEGPTGKALECFKWAVHLRPYDRLIIRSLSERYCSLGKNE
ENMELLEKSAGYRQFDQWTWAWREVGMYQLFKGNNPIKAIKAFQRLCPSPAGVTENGDLV
SLDLLAESFYRQGNWPTAAKIWRQYCKFNPDMYHLQLLGDALQKSQRFEEALETYGRIGE
EHWAPLFSTGHAYAYKARVNEKAGKFGIAFRSWCAAVEPLERALQLRPSAMFVEKTLADA
QFAMAIYRQPNPILWARKAWQHYLNCWSCIGRYPSNVYGQVARSMALCAVYLCKKASDED
LDDQLRKVGRPALKALKRTIKAQPNVISNWIIFGFAAARLRKPKLAQHCFIRAIMINRES
VQSWTNLGMLYLENHDYDLAYECFRNAQNMTACYGHSWYGMGLLSEKVKQSESTLDILKE
SCRISCQRSVVFDYGRRFCENLVEFTKKHGHCDHFNVKDLLFVSEIFPTVIYLFYSNPIT
LNNLGVFFEIRGDYNAAYKAYNDSLALMNSDDCDWKETRVIVKTNILRLAG
NT seq 3216 nt   +upstreamnt  +downstreamnt
atgaaagtgccgaagaacaaagataaaaagacgaaaaagcagaataaaaatacctgcaat
aagaatacgactaaaggaaggagcaaaggtgtttctatttgtgaagatgcggcagaatcg
tctgccaagaatcagcaaaatgttgtcattgatcaaccatcacgtgtcatggatccaaaa
gaggagaaagcactgttaaaagatgcaaaagcaaagtatcaagaaaaggagtataataaa
tgtcttgaaatttgtaaatataaacgaaattataaatttaatcataagacgattttgaat
tgcaatacgaagtgttactttggttttttgttttctggtttatgttatatttttttgaac
aattacactgaagcaaagaaatttttgaaagctgccttggaaattgagccggacaatgtc
aacgcgtggaaaggtttggaaatgtattacgagacgttcaattttaacgacattcttcac
gtggaagtattgcgcaagttgattcaggtggagaaggaaaacagaaaaaaactgacttta
aaattattcaagtcattagtcgatttgggaaaaagagaagaggcattgtcagaattgttt
gcatatttgggtgatgtgaatgacgaattggaggtgttcgacagttatgagattatgttg
aaaaaacatttggtgtcaactgatgctcaattgaaatatgcagaattttgtcaaaagaaa
gctttgatagaagggttggcactaacaaaaatgactgaaaacaaagatttggcattttta
attcaagttttcaaattaataggccatatatatatcgatattaacagtgacgaaattgac
attgacatgtctgtaatggacgagtgtgaagaatatctgttcaataactttgaccatatg
caggcgcacagcggcgatataggatgggcttttatgacactggtagatggcttgcgagag
attgacacgttcaattatgatagagctgcagaaattttgaatactatttttcgaggcgtc
ggtttgaaaggcatgcatggagactgccgtgatagcaatactgtcgattatggtgaagaa
aagtatatcccgtatcggtttgaaattggtttttttttgattgttgcatacgtacacaag
cacgattatttgaatgcacagctagtggctgaagaaatggtgaaattgaatttgggcatg
gattcacgtccgcgttattatattttacgtttgcgtttggcagaaatttaccgtgaactg
cagtggaattatgaacaggcgaaagaatattgcttagaacttctggctcagattcatttg
ccgttcagcgaacgaacggtacaacgtgccaggatctgtttggcattgctgctggcccaa
gagggtgacgtggcgaggggtttggaactgttggcccaagatgagaccggctatgaaatt
cactgcgctcgtgccgaatgctatttgcggatggaaaagctgcaggaagcgttggctgaa
gcgacggccgctatggatcaaaacgacgacgacgacgcccaagcccactatttgatgggt
gaaacgttgcgttcgattggacaagatccggctgttgctttgaaagaactgttgcaagct
tgcaaattgaacgcctaccacgccccgtcgtttttcagcctcggtcagttgctttggttg
accgaaggtcccacgggaaaagcgttggaatgtttcaaatgggcggtccatttgcgaccg
tacgacaggctgatcattcgctccttgagtgaaaggtattgttcgttgggcaaaaatgag
gaaaatatggaattgttggaaaagagcgccggctatcgacaattcgaccagtggacttgg
gcgtggcgagaggtcggcatgtatcaacttttcaagggcaacaatccgatcaaagcgatc
aaagcgttccaacgtctttgtccatctccggccggcgttaccgaaaacggtgatctggtg
tcgttggatttgttggccgagtcgttttatcgacaaggcaactggccgacggcggcgaaa
atttggaggcaatattgcaaattcaatcccgacatgtaccatctccagctgcttggagat
gcgctgcaaaagtctcaacgtttcgaagaggcgctcgaaacgtacggtcgtattggcgaa
gaacactgggcaccgttgttttccactggtcacgcgtatgcttacaaggccagagtgaac
gaaaaggcaggcaaatttgggatcgctttccgtagttggtgtgcagctgttgaaccactc
gaacgagctcttcaacttcgaccgtcggcgatgtttgtggagaaaactctcgccgatgcc
caatttgccatggccatttaccgacagccgaatccgatcctctgggccaggaaagcttgg
cagcattatttgaactgttggtcatgcattggacgttatccgtccaatgtttacggccaa
gtagctcgttccatggcactgtgcgcagtttatttgtgcaaaaaagcatccgacgaggat
ttggacgaccagcttcgtaaagttggtcgtccggcgttgaaagctttgaaacgaacgatc
aaagcacagccgaacgttatttccaattggattatttttggcttcgctgccgctagatta
cgcaaaccgaaactggcgcagcactgtttcattagagctataatgattaatagggaaagt
gtgcaaagttggacaaatcttggaatgctctatttggaaaatcacgactacgaccttgct
tatgaatgttttcgtaatgctcaaaatatgactgcctgttatggacacagttggtatggg
atgggattgctttcagaaaaagtgaagcagtctgaaagcacgttggacattttgaaagaa
agctgtcgtatatcttgccagcgatctgtagtttttgattatggtcgccgcttttgtgaa
aatttagtcgaatttacaaagaaacatggccattgcgatcattttaacgtgaaagatttg
ctatttgtatccgaaatatttccaacagttatatatttgttctattcgaatcccataaca
ttaaataatcttggcgtattctttgaaattcgaggcgattataatgctgcgtacaaagct
tacaatgattctttggccctgatgaattctgacgattgtgattggaaagagacgagagtg
attgtgaaaacgaatatattgagattagctgggtag

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