KEGG   Trichinella spiralis: Tsp_09114
Entry
Tsp_09114         CDS       T01609                                 
Name
(RefSeq) putative ATP synthase F1, delta subunit
  KO
K14297  nuclear pore complex protein Nup98-Nup96
Organism
tsp  Trichinella spiralis
Pathway
tsp03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    Tsp_09114
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsp03019]
    Tsp_09114
   03036 Chromosome and associated proteins [BR:tsp03036]
    Tsp_09114
Messenger RNA biogenesis [BR:tsp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     Tsp_09114
Chromosome and associated proteins [BR:tsp03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    Tsp_09114
SSDB
Motif
Pfam: Nup96 Nucleoporin2 Nup98_GLEBS Nucleoporin_FG
Other DBs
NCBI-GeneID: 10902920
NCBI-ProteinID: XP_003382273
Position
Unknown
AA seq 1585 aa
MFGNQPTFGTTGFGTGAGSFNAPFGQQQTTGLFGAPTPATQATGLFGTAPASTGTGLFGS
TATTQGSLFGTSISTQNKPLFGASAPSTFGNYSDFVYKEFSFFVILGTVGTTSIFGQPAG
QPAAATNIFGAPATTSSSLFGSTTTASGTTVKFEPVVGSDTMMRNNIQTAISTKLQCITG
MKHYEGKSFEELRVEDYLANRKGPVAAATFGFGAPQSNAGSLFSTTPAQASSAPSLFGNQ
AKPLFGTSTFGASQPSTGLFGQTATTAQQTTNIFGSSLFSSTPATTTSVFSFNTAAPTGG
LFGQTQPQQPQQGIFGQPALGATSTATTVGSIFGQTSLFGQPQLQSQPAATQANIFGQTQ
QTPFGAVPAVPATTASLFGGSLFGNKTATTTAASLFPTFGTSTLGFPQPTSNALSSSSFP
GVAQQSAGLNTNYVVPIGTDPNVLAAQENLVRSQLQAMANSPYGESPLLKLTESHSELLK
NPTDPLQMRKALDLSTLSRVVPETVMLPPSLAALVDDLDEEVVSGSHDGFVPRDRIKKLV
LKKRVQCSNTNCTPFLPELSFFDNAKPITSIDEGSNLSNGSHADNESAAVSLINNNTSRD
RKAKSNSSPSITKSSDFSINGTVEVSEYDHIASSGGPSRSGIESKMSDKNNYSTSASTNV
VDLNDSGTSSTGVKLFNKKGLKITSTRSDYYFTPNLDELASKMTRSGECVVDRFEVGRHG
YGKIVWRGPLNLTDLNLDKLVFFELKEVTVYPDASSKPPIGQGLNRAAIITLERDAKRLE
HLGYEEKLKRACEKMNAKFVSYAPTTGSWIFEVKHFSKYGLDDDSDEAEENGGPLSKQSE
EKIVEKKETKDKSPHPKANSICTTVSSVVKLGAESPKSSSISANGKITSESTAKKKTIEQ
SNISAADGAEGVVAERLKTNQSKNITHSSIRLALASSEKLLKGVDCGIGLPILKTGRISM
KKEEKVNQLPSLTDLYESSMLMIDETDIGGKDEKSKEAAILAETKKKPDDVCISDESETT
AVQFNVEFIPPQKSPILNHLPAKLHHRQLSNECRIGWHCNRVSYSSCSNTMSTITRLQMK
TKRDDEAFKNVLKMLLKCCFDLSERLDKDSSPFFSPVDAVKLIVAYDEILKDQTKNCPDV
ELCRDAVLLCKALWEPRPESDDDLKDVIDLQKLSDWLINRSGRYIFNHELNDDFQIFDEI
FLLLIKGSIDEAVELCQSEKCYRLSTLLSQATLADESRKLMLDQLQAWTVSKVDNFINPK
IFKLYLLIAGQVTWRRSGNRVIDVLHNVHWLSAFAFFLWYYDGGAISVENALKHYSEFWE
HEKFSVPKPSPLYLYNSSSDCVATDILYHLLMLFVNTKHSLESVLNNSTWSEDPLDYHLS
WHLWTILHAVGYTNVSNEQLNALHCAYAAQLEELGLWHWAIFVLSHIADSKTRITAIQRM
IAYRGFSADEEALRAHAEEDFWAEFKWQLKACNYNMAHQLFTEHIGPKLFLEGKFDELLN
IKKLTLEKHSSSISEWHFLGEIYFEAIELMKMDPGKQLFSDKQVVQMSELLTELPVPDDT
ILDTAENVAKAAITYLKNAQVYGKE
NT seq 4758 nt   +upstreamnt  +downstreamnt
atgtttggaaatcaaccaacatttggtacaaccggctttggaaccggcgcaggctcgttt
aatgcaccgtttggtcagcagcaaactactggcctatttggtgctccaacaccagctacg
caagcaactggcttatttggcactgctccggcttccacgggtacaggattgtttggatct
acagctactactcagggatcgctttttgggacaagtatttctactcaaaataaaccattg
tttggagcttcagcgccatcaacattcggtaattacagcgattttgtttataaggaattt
tcattttttgtaatattaggcactgttggaacgacttcaatatttgggcaaccagcagga
cagccagcggcggcgaccaacatctttggtgcaccagctacaactagttcatcgttgttt
ggttcgactacaactgctagtggtacaacagtgaaatttgaaccagttgttggtagcgac
acaatgatgaggaataacatacaaactgctataagtacaaaacttcagtgcataactgga
atgaaacattatgaagggaaaagttttgaggaacttagagttgaagattatttggcaaac
cgtaaaggcccagttgcggcggctacatttggatttggcgctccacagagtaatgctggc
tcactgttttcaactacaccagctcaagcgagctcagctccttctctttttggtaatcaa
gcaaaaccgttgtttggaacaagtacatttggtgcatcacagccatccactggcttgttt
ggtcaaacggctactactgctcaacagactactaatatttttggttcttcattattcagt
agcacgccggctacgacaacgtcagttttcagctttaatacagctgccccaacaggagga
ttgttcggtcaaacgcaaccacaacagccacagcagggcatttttggacaacctgctttg
ggagcgactagtacagcaactacagttggatctatatttggccagacatctctgtttgga
caacctcagctgcaatctcaacctgcagcaactcaagcgaacatttttggacagacgcag
cagacaccatttggagctgtgcctgcggtgcctgctactacggcatctttgtttggtggt
agtctgtttggaaataaaacagctactactacagcagcatcactttttcctacttttggc
acatcaacattgggctttcctcagcccacttcaaatgcattgagcagttcttcttttccc
ggagttgcacagcaaagtgcaggtcttaatacaaattacgttgtgcccattggaactgat
ccgaatgttctggcagcgcaagaaaatttggttcgttctcagttgcaagcgatggcaaat
tcaccgtacggcgaaagtccgttgttgaaattaaccgaatctcattcggagttattgaaa
aatccaacagatccactgcagatgcgcaaagctttggatttatccactttgtctagagta
gtaccggaaacggtcatgctacctccgagcttggcagcactggttgatgatttggacgaa
gaagtggtgagcggttcgcatgatggttttgtaccaagggacaggataaaaaagctcgtg
ctgaagaaacgtgttcagtgttccaatacgaattgtaccccgtttctaccggaattatca
tttttcgataatgcgaagccaattacgtcaatagatgagggatcgaatttgagcaacggt
tcccatgcagacaatgaaagcgcggccgtttcactgatcaataataatacatccagagat
cgaaaagccaaatcgaacagcagtccaagcattaccaagtcgtcggatttttcgataaat
ggaacggttgaagtttctgaatacgaccacatcgcctccagtggtggtcctagtagaagt
ggaattgaaagcaaaatgtcggataagaataattattcaacgtcagcgtcgaccaacgtt
gtcgacctgaacgacagtggaacgtcgtcgacaggagtgaaattattcaacaagaaaggc
ttgaaaatcacatcaacacgttcggattattatttcacgccaaatttggacgaactggcg
tcgaaaatgacacgctcgggcgagtgcgttgttgaccgtttcgaagttggtcgacatgga
tatgggaaaattgtttggcgaggaccgttgaatttgaccgatctcaatttggacaagctc
gtcttctttgaactgaaggaagtgaccgtctatccggacgcctcgtccaagccaccaata
ggtcagggcttgaatcgggctgctataatcacattggaacgtgatgctaaacgattggaa
catcttggttatgaggaaaagttgaaacgggcgtgtgaaaaaatgaacgcgaaatttgtc
agttatgctccaactactggttcttggatttttgaagtgaagcatttttcaaaatatgga
ttggacgatgattcggatgaagctgaagaaaatgggggaccactttcaaagcagtcggaa
gaaaaaattgtcgaaaagaaagaaacgaaagataaatcgcctcatcccaaagcgaatagt
atttgtacaacggtatcgtctgttgtgaaattgggcgctgaaagtccgaaatcgtcttcc
atttctgctaatggaaaaatcacgtcggaatctacagctaaaaagaaaacaatcgaacag
agcaatatcagtgctgctgatggtgcggaaggagtggtcgcagaacggttgaaaactaac
cagtcaaaaaatattacccactctagcataagattagcattggcaagtagtgagaaactt
ttgaaaggagttgattgcggtattggtttaccaattttgaaaactggacgcatttcaatg
aaaaaagaagaaaaagttaatcaattgccatctttaaccgacctatacgaaagcagcatg
ttgatgattgatgagacagatattggtggaaaagatgaaaaaagtaaagaagcagcaatt
ttagccgagaccaaaaagaagcctgacgatgtctgtatttccgatgaatctgaaacaact
gcagttcaatttaatgtggaatttattccacctcaaaaatctcccattttgaatcacttg
ccagctaaactgcaccacagacaattgtccaacgaatgtcgaataggatggcattgcaac
agagtctcatattcctcttgtagtaataccatgtcgaccattacacgtttgcaaatgaaa
accaaacgtgacgatgaagcgtttaaaaatgttctgaaaatgttgctcaaatgctgcttc
gatctaagcgaaagattggataaagattcgtctccatttttttcgcctgtcgatgctgtg
aagctaattgtcgcgtacgatgaaattttaaaagaccaaactaaaaattgtccagatgtt
gaactctgccgggatgcagtgctgctttgcaaagcgctttgggaacctcgacctgaaagt
gatgatgatttgaaagatgtaatcgatttgcagaaattatctgattggctaataaatcgc
agtggacgatacatttttaatcatgaacttaacgacgattttcagatttttgatgagata
tttttattgctaatcaaaggtagcattgatgaggctgttgaactttgccaatctgaaaag
tgttatcgattatctacgttgcttagtcaagcaactcttgctgacgaatctcgcaaattg
atgcttgatcagctgcaagcatggaccgtatctaaagttgataattttataaatccgaaa
attttcaaattatatttgttgatcgctggtcaggtgacgtggcgtcgcagtggtaaccga
gtaattgacgtacttcacaatgttcattggttgtcagcatttgcattttttctttggtac
tacgatgggggtgcaatatctgtcgaaaatgcgctgaaacattacagtgagttttgggaa
catgagaaattttccgttccgaagccttctccactctacttgtacaacagtagttcagac
tgtgtagcaacagacattttgtatcacttgttgatgctttttgtcaacacgaagcattca
ctggaaagtgtactgaataactctacgtggtcagaagatccattggattaccatttgagt
tggcatctttggacaattttgcatgcagttggttatacgaatgtttcgaatgaacagttg
aatgctttgcactgcgcttatgctgctcagttagaagagcttggtctttggcattgggct
atttttgtcctttcccatattgcagactcgaaaacaagaataactgccatacagagaatg
attgcttaccgtggatttagcgctgacgaagaggcattaagagcacatgcagaagaggat
ttctgggctgaatttaaatggcaattgaaagcgtgcaactataacatggcgcatcaactg
ttcacagaacacattggtccaaaactgtttctcgagggaaaattcgatgaattgttgaac
attaaaaaattgacactggaaaaacattcctctagcatttccgaatggcattttctggga
gaaatatattttgaagcgatcgaattgatgaaaatggatcccggtaagcagttgttcagt
gataagcaagtggtacagatgagtgaactgctgacagaactgcctgtaccagacgatact
attttggacactgcagaaaatgtcgctaaagctgcaataacttatttgaaaaacgctcag
gtttacggtaaagaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (54)   
   KEGG ORTHOLOGY (1)   
   RefGene (50)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (65)   

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