KEGG   Trichinella spiralis: Tsp_12155
Entry
Tsp_12155         CDS       T01609                                 
Name
(RefSeq) putative RNA recognition
  KO
K12893  serine/arginine-rich splicing factor 4/5/6
Organism
tsp  Trichinella spiralis
Pathway
tsp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Tsp_12155
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tsp03041]
    Tsp_12155
Spliceosome [BR:tsp03041]
 Common components
  Common spliceosomal components
   SR proteins
    Tsp_12155
SSDB
Motif
Pfam: RRM_1 RRM_5 Lung_7-TM_R
Other DBs
NCBI-GeneID: 10902139
NCBI-ProteinID: XP_003381903
UniProt: E5RZJ1
Position
Unknown
AA seq 351 aa
MKFTVTLCCTLLLIRRFTVLTCCQSTVNLCTSFWQRWLCVTLVSCEMGTRVYVGRIPYRA
TERDIEKFFRGFGRIREIFLKNGYGFVEFEHTEDADDACYELNGREMFGERLIVEIARGT
PHGRDRYGWRQSYRVRSDRYDRRFVSCAKLWTQWLLALTCDPFIAHFQCVKTSFDANLSS
ADTNLIGSHISLADVVANSPTAVDEPTTIFYSVPDNLWCLKIYLCTSRVCGLFKLQRSRS
RSRSRSRRRSRSRSKHLAFSRDRRRHRRESVSLSRSRSRSRSRSAPPRRKSESPGEDSNC
KSPERERNGNGDNNSVRSGSAERGGGYSESASTPRSAVGAEDNGEFEDERE
NT seq 1056 nt   +upstreamnt  +downstreamnt
atgaagttcactgtaactctttgttgtacactgttacttattcgtaggtttactgtatta
acgtgttgtcaatcaacagtaaatttgtgtacttcgttttggcaacggtggctttgtgtg
acgcttgtttcgtgcgagatgggtactcgtgtttatgttggtcgtattccttacagagca
actgaaagggatatagaaaaattttttcgtggttttggtcgaataagagaaatatttctg
aagaatggttatggttttgttgaatttgaacacaccgaagatgcagatgacgcttgttat
gaattgaacggccgggaaatgtttggtgaacgattgatagttgagattgcccgcggaact
ccacacggtcgagaccgctatggttggcgtcagtcgtatagagttcgaagtgatagatat
gatcggaggtttgtcagttgcgcaaagctttggacacaatggttgttagcactcacctgc
gatccattcattgcccattttcaatgtgtcaaaacttcgtttgatgcaaacttatcaagt
gcggacaccaatcttatcggctcacacatttccttagcagacgtcgttgcgaattcacca
actgcagttgatgaaccaaccacaatattttattcagtaccagataatttatggtgctta
aaaatttatttgtgcacgtctcgtgtatgcggtctctttaaattacaacggtctaggagt
cgttctcgatctcgttctcgtagacgcagtcgatcacgaagtaaacatttggcgtttagt
cgtgaccgtcgtcgacatcgtcgcgagagcgtgtcgttgagtagatctcgaagtcgaagt
cgatcgcgttcagctccgccacgtcgtaaatccgaaagtccaggagaagatagtaattgc
aaatctccggaacgtgaaagaaacggaaacggagataacaactctgtgcgctctggttct
gctgaacgaggcggaggctattcggaaagtgcatcgacaccacgatcagctgtgggcgcg
gaagataatggcgagtttgaagatgaacgagaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (37)   

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