KEGG   Trichinella spiralis: Tsp_12515
Entry
Tsp_12515         CDS       T01609                                 
Name
(RefSeq) putative ABC transporter, ATP-binding protein
  KO
K06174  ATP-binding cassette, sub-family E, member 1
Organism
tsp  Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:tsp03009]
    Tsp_12515
Ribosome biogenesis [BR:tsp03009]
 Eukaryotic type
  Pre-40S particles
   Other pre-40S particles
    Tsp_12515
SSDB
Motif
Pfam: ABC_tran RLI Fer4 AAA_22 AAA_21 AAA_16 Fer4_6 SMC_N Fer4_7 NACHT AAA Rad17 RsgA_GTPase nSTAND3 AAA_15 Fer4_2 Fer4_21 AAA_29 Fer4_9 AAA_28 VapE-like_dom Fer4_4 Fer4_10 AAA_5 TsaE SRP54 AAA_30 Fer4_16 Fer4_3 AAA_23 AAA_19 AAA_13 Fer4_8
Other DBs
NCBI-GeneID: 10899479
NCBI-ProteinID: XP_003367607
Position
Unknown
AA seq 575 aa
MSKLPKPGHTEQSKITRIAIVNNDRCKPKNCGQVCKKSCPVVRMGKLCIEVTPSSKIAFI
SESLCIGCGICVKKCPYDAISIINLPSNLEKHTTHRYGPNSFKLHRLPTPRPGEILGLVG
TNGIGKSTALKILSGKLKPNLGKYKEPPEWQEILTYFRGSELQNYFTKLLEDNLRAVIKP
QYVDQIPQAAKGLVSDMIAKKDDLKKADAMCRLLDLENVMDRNVADLSGGELQRFAIAVV
CIQRADIYMFDEPSSYLDVKQRLKAAVAVRSLVHSDNFSIVVEHDLSVLDYLSDFICVLY
GVPGAYGVVTMPFSVREGINIFLDGFVPTENLRFRETSLSFKYPSMKKSLGSFELTVEAG
NFSDSEIIVLLGENGTGKTTMIRMLAGRLEPDVNAGEIPQLNISYKPQKISPKSNCKVSE
LLRSKIPDTFVHPQFVAEVLKPLNIEDILDQDVQNLSGGELQRVALVLCLGKSADVYLID
EPHILNAKKTAFIVEHDFIMATYLADRVIVFEGEPSKHALATCPQSLLKGMNRFLERLDI
TFRRDPNNYRPRINKLNSVKDTEQKRSGNYFFLED
NT seq 1728 nt   +upstreamnt  +downstreamnt
atgtctaaattaccgaaacccggtcacacggagcagagtaaaattactcgaatagcaata
gtgaacaatgatcgatgtaaaccaaaaaactgtggtcaagtttgtaaaaaatcttgcccg
gtggtgcgaatgggaaaattgtgtattgaagtaactccgtcgagcaaaatagcttttata
tccgaatctctttgtattggttgtggtatatgcgtgaagaaatgtccttatgacgcaatt
agtataattaatttgccgagcaatttggaaaagcacacgactcatcgatacggtccaaac
agttttaagctgcatcgattgccgacgccgaggccaggtgaaattcttggtcttgtaggt
acaaatggtattggaaaatcaacggcgttgaagattctttcgggaaaattgaaaccaaat
cttggaaaatataaagaaccaccagaatggcaagaaattttgacgtattttcgtggatct
gagctacagaattactttacgaaattattggaagacaatcttcgggcagtaataaaacca
cagtatgttgatcaaattcctcaagctgcaaaaggacttgtcagtgatatgatagcgaag
aaggatgatttgaaaaaagctgatgcaatgtgcagattattagatttggagaatgttatg
gatagaaatgtcgcagatttatccggcggagagctgcagcgttttgccattgctgttgtt
tgtattcaacgtgcagacatatacatgtttgatgaaccatcgagttatttggatgtgaag
cagcgtttgaaagctgcagtggcggtgcgctctctggtgcattctgataatttttccatt
gttgttgaacacgatttgtcagttctcgattatttgtcagattttatctgtgttctttat
ggtgtacctggcgcttatggagttgtgacaatgccattttctgtacgagaaggaatcaat
atatttttagatggctttgttccaacagaaaatttacgatttcgagaaacatcattaagt
tttaaatatccatctatgaagaaatctttgggtagttttgaattgaccgttgaagcaggc
aacttttcggattcagaaattattgttctattgggtgagaatggtactggaaaaacgacc
atgattcgaatgcttgctggaagattggagccagacgtgaatgcgggtgaaataccacaa
ttgaacatttcatacaagcctcaaaagatcagcccgaagtcgaattgtaaagtttcagag
ttgttgcgttcgaaaattccagatacgtttgtgcatccccagtttgttgctgaagtgttg
aaaccgttaaatattgaagatatattggatcaagacgtgcaaaatttgtctggtggcgaa
ttgcagcgtgttgcattggtgttgtgcttgggaaagtcggcagatgtgtatctcattgac
gaaccgcatattttgaacgcgaagaagacggcatttattgttgaacacgactttatcatg
gcaacatatcttgccgatcgtgttattgtttttgaaggagaaccttcaaaacatgcctta
gctacatgtccacagagtttgcttaaaggaatgaatcgatttttggagcggttggacatc
acttttcgaagagatccgaacaattaccgtcctcgcatcaataagttgaattctgttaaa
gatactgagcagaagagatctggaaattatttctttttggaagattaa

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Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (46)   
   KEGG ORTHOLOGY (1)   
   RefGene (42)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (33)   
   Pfam (33)   
All databases (84)   

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