KEGG   Thamnophis sirtalis (common garter snake): 106551746
Entry
106551746         CDS       T06107                                 
Name
(RefSeq) uncharacterized protein LOC106551746
  KO
K19719  collagen type II alpha
Organism
tsr  Thamnophis sirtalis (common garter snake)
Pathway
tsr04510  Focal adhesion
tsr04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:tsr00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    106551746
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    106551746
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:tsr00536]
    106551746
Glycosaminoglycan binding proteins [BR:tsr00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   106551746
SSDB
Motif
Pfam: Collagen VWC
Other DBs
NCBI-GeneID: 106551746
NCBI-ProteinID: XP_013925369
UniProt: A0A6I9YN84
Position
Unknown
AA seq 839 aa
MFSFLDSRTLVLLAAIQVILLEVVNCQNEDKEEAGSCVQDGQRYSDKDVWKPEPCQICVC
DTGTVLCDDILCEEMRDCPRPEIPFGECCPICPTDQPTASGQPGPKGQKGEPGDIKNVVG
PKGPPGAQGPSGEPGPRGERGDKGERGAMGPRGPPGLPGKPGEDGEAGKPGKSGERGLPG
PQGARGFPGTPGLPGVKGHRGYPGLDGSKGEAGAPGAKGEAGSSGENGSPGPMLQFSDGI
EGVHTSTMASANSVQCWVLVAFQVKEDVLAHLVLLDLLALLVDQGFQELQGQRVKLVPLA
LVALRVPKALEVNLDPLVLRDLQDLQATLEVTGSLVPKDQPEVLALLVLLVSLAHVGHLG
HKVQQDLWAPKVRRESPELQASKVNKAPRVNLALGDHKEPLGQPAKKGREEDVVNQELQD
QLDHLERGVLPENVAPLALGDSKVPLEILEGLENLACLAPGSNMLSQFCGIHNSQSFQIT
FYVHKSPFLNDLDSENLYRFKFVDLPHFQCQVVSLVALGMLVLKAKLAHLVFRVKMDGLA
HLVLKVLVVSLVSWVSQAPKVLMVKAVKLARKGYLVLLDYEVFLAKMAYSVVVVVSDDDD
DICRGLLEREVNKVPLDHLDSKDFQDPQALQVKVEKQVTKVFLEKLVLLVLLVPEVNVAS
QENADLQVPKVWVVLEGFPEPLVLMDPRVQLALLGLLEPKAPQACRECLVREELEVFLDQ
RETGVMLVRKAQKVLLAKMAAEVNQVLLAQVELLVLGVPLVSVEKPDPLAPLGLLVPLVL
MASLVLKASKVDLARKEMLGPLVHKGHLVLLVHSFWHAVDQDMLTWADGPCFKVQVQIY
NT seq 2520 nt   +upstreamnt  +downstreamnt
atgttcagctttctggattcaaggactctggtgctcctagcagctattcaagtaatttta
ttagaagttgtcaattgtcagaatgaggataaagaggaggcaggcagctgtgtacaggat
gggcagagatatagtgataaagatgtgtggaaacccgaaccgtgccagatctgtgtttgt
gacactggcactgtcctctgcgacgatattctctgcgaagaaatgagagactgtcccagg
cctgagatacccttcggagaatgttgccctatatgtcctactgatcagcccaccgccagt
gggcaacctggtcccaagggtcaaaagggagaacctggtgatatcaagaatgttgtagga
ccaaaaggccctcctggagcacagggaccttcaggtgaaccaggaccaaggggagaacgt
ggagataaaggagaaaggggtgcaatgggtccccgtgggccacctgggttacccggaaaa
ccaggagaagatggtgaagcaggcaaaccaggcaaatcaggagagcgaggattacctgga
cctcagggtgctcgaggtttccctggcaccccaggccttcctggtgtcaaaggtcacaga
ggatatcctggtttagatggctctaaaggagaagctggagctccaggtgctaagggtgaa
gctggatcttctggggagaatggttctcctggtcctatgttgcaattcagtgatggtata
gagggcgtccacacatctaccatggccagtgcgaattcagtccagtgttgggtcctcgtg
gccttccaggtgaaagaggacgtcctggcccatctggtgctgctggacctgttggccctt
ctggtggaccagggtttccaggagctccaggggcaaagggtgaagctggtcccactggcg
ctcgtggccctgagggtgcccaaggctctcgaggtgaatctggatcccctggttctccgg
gacctgcaggacctccaggcaaccctggaagtgacgggatccctggtgccaaaggatcag
ccggaggtcctggcattgctggtgctcctggtttccctggcccacgtgggccacctgggc
cacaaggtgcaacaggacctttgggccccaaaggtcaggcgggagagcccggaattgcag
gcttcaaaggtgaacaaggccccaagggtgaacctggccctgggggaccacaaggagccc
ctgggccagccggcgaagaagggaagagaggaggacgtggtgaaccaggagctgcaggac
caattggaccacctggagagaggggtgctcccggagaacgtggcccccctggccttgggg
gactcaaaggtacccctggagatcctggaaggcctggagaacctggcctgcctggcgccc
ggctcaaatatgctaagccagttttgtggcatccataattctcagagcttccagattacg
ttttatgtccataaaagtccttttttgaatgatcttgactcagaaaacctctacaggttt
aaatttgtagatctgccccattttcagtgccaggtggtctcactggtcgccctggggatg
ctggtgctcaaggcaaagttggcccatctggtgttccgggtgaagatggacggcctggcc
cacctggtcctcaaggtgctcgtggtcagcctggtgtcatgggtttcccaggccccaaag
gtgctaatggtgaaagcggtaaagctggcgagaaagggttacctggtgctcctggattac
gaggtcttcctggcaaagatggcttacagtgttgttgttgttgtttctgatgatgatgat
gatatttgcagggggctgttggagagagaggtgaacaaggtgcccctggaccatctggat
tccaaggacttccaggacccccaggcgctccaggtgaaagtggaaaagcaggtgaccaag
gtgttcctggagaagctggtgctcctggtcttgttggtcccagaggtgaacgtggcttcc
caggagaacgcggacctgcaggtgcccaaggtttgggtggtgctagagggcttcccggaa
cccctggtactgatggacccaagggtgcagctggccctgctgggcctcctggagcccaag
gccccccaggcctgcagggaatgcctggtgagagaggagctggaggtattcctggaccaa
agggagacaggggtgatgctggtgagaaaggcccagaaggtgctcctggcaaagatggca
gccgaggtgaatcaggtcctcctggcccaagtggagctgctggtactcggggtgcccctg
gtgagcgtggagaaaccggaccccctggccccgctgggtttgctggtccccctggtgctg
atggccagcctggtgctaaaggcgagcaaggtggatctggccagaaaggagatgctgggt
cccctggtccacaagggccatctggtgctcctggtccacagtttttggcatgccgtggac
caggacatgttgacctgggcagatggaccatgcttcaaagttcaggtccagatctattga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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