KEGG   Treponema succinifaciens: Tresu_1078
Entry
Tresu_1078        CDS       T01461                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
tsu  Treponema succinifaciens
Pathway
tsu03030  DNA replication
tsu03410  Base excision repair
tsu03420  Nucleotide excision repair
tsu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tsu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Tresu_1078
   03410 Base excision repair
    Tresu_1078
   03420 Nucleotide excision repair
    Tresu_1078
   03430 Mismatch repair
    Tresu_1078
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tsu03032]
    Tresu_1078
   03400 DNA repair and recombination proteins [BR:tsu03400]
    Tresu_1078
Enzymes [BR:tsu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Tresu_1078
DNA replication proteins [BR:tsu03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Tresu_1078
DNA repair and recombination proteins [BR:tsu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Tresu_1078
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Tresu_1078
   MMR (mismatch excision repair)
    DNA ligase
     Tresu_1078
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Tresu_1078
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_5 PTCB-BRCT RNA_ligase HHH_2 BRCT_2
Other DBs
NCBI-ProteinID: AEB13994
UniProt: F2NVL5
Position
1147670..1149625
AA seq 651 aa
MELFDVEECKKANDEALKKSSVKRISELEKLIEKYQASYYNGEAEISDAEFDKLWDELKS
LDSANPILHKVGADSGNFQKSPHVMPMGSQEKAATPEEFLDWAKKHDYSEYLVEYKLDGA
SLELQYSDGIFLRAVTRGDGTVGDVITANAKKMQGVVQELKEKFTGGIRGEVIMTHQVHE
KFFSDKANCRNAANGLMKRKDGEGSENLTLITYDVWASEGKQPFNDEEGKLDFLQRNGFN
VVPLKICKSTQEVIDYRSSVMELRKNLDYDIDGLVVKERAVDHEDALRDRPDRQIAFKFS
LEEAVSIVRNIEWNETGATYTPVAVFDPVDLNGTTVKRASLVNPNLIRALNVKIGSHVVV
VKRGEIIPKIVSVLPEQENLPSVKIPEKCACCGTSLIDEGTRLFCPNKNCEKRILHQLLK
WINVIDIRDLGETLITSLFETKKVRSISDLYSLTASDLVPYFLNSESMEKEKKSLGAEKV
FASIQSRRKIPLAKFIAGFDIEGIGETVVETLIAGGFNTLQKIFDAKEEEIAGVYRFAET
LAHTLVEGIQENREEMQSLVSSGTISVIEGAAQGKLAGKSFCFTGELVSMKRQDAQNLVK
QNGGAVKSSVVKGLSFLVTNDTSSGSSKNKKAMELGIPVIDEKEFLALIKD
NT seq 1956 nt   +upstreamnt  +downstreamnt
atggagctttttgatgttgaggaatgcaaaaaggcaaacgacgaagccttaaaaaaatcc
tctgtaaaaagaatttctgagcttgaaaaacttatagaaaaataccaggcttcgtattat
aacggcgaggctgaaatctctgatgcggaatttgacaagctttgggacgaattaaaatcg
ctggacagcgcaaatcctattctccataaagttggcgcagattccgggaattttcaaaaa
tctcctcatgtaatgccgatgggcagccaggaaaaagccgcgactccagaagaatttctt
gactgggcgaaaaagcacgactattcagaatatcttgttgaatataagcttgacggagcc
tcccttgaacttcagtattcagatggaattttcttgcgtgccgttacaagaggagacgga
actgtaggggacgtcattacagcaaatgcaaaaaaaatgcagggtgttgttcaggaatta
aaagaaaagtttacaggcggaatccgaggcgaagtcataatgactcatcaggttcacgag
aaatttttttctgacaaagctaactgccgcaatgccgctaacggacttatgaaacgaaaa
gacggtgagggcagcgagaatcttacattgataacttacgatgtctgggcttccgaaggt
aaacagccgttcaatgatgaagaaggcaaacttgattttttgcaaagaaacggatttaat
gttgttccacttaaaatttgcaaaagcacgcaggaagttatagattaccgttcttctgtc
atggagcttagaaaaaatcttgactatgacattgacggacttgttgtaaaagagcgtgct
gtggatcacgaagatgctttgcgcgacaggcctgaccgccagattgcctttaaattcagc
cttgaagaagctgtttccattgtaagaaatattgaatggaatgaaaccggcgcaacttat
actccagtcgcagtttttgatcctgttgacttgaacggaacgactgtaaaaagagcgagt
cttgtaaatccgaaccttatacgcgcattaaatgtaaaaatcggaagccacgttgttgtt
gtaaagcgcggtgaaataattccaaaaatcgtgagcgtgcttccagagcaagaaaatctt
ccgtctgtaaagattcctgaaaaatgcgcttgctgcggaacttctcttattgacgaagga
acaaggcttttttgtccgaataaaaactgtgaaaagcgaattctccatcagcttttaaag
tggataaatgtgattgacatccgcgacttgggagaaactttaatcaccagtctttttgaa
acaaaaaaagtccggtcaatttcagatttgtattctttgactgccagtgatttagttccg
tactttttgaattcggaaagcatggaaaaagaaaaaaaatcgcttggcgcggaaaaggtt
tttgcttcgatccagtcaagaagaaaaattccacttgcaaaatttattgccggctttgac
attgaaggaataggtgaaactgttgttgaaactttgattgcaggcggcttcaatactttg
cagaaaattttcgatgcgaaagaagaagaaattgcaggcgtctatcgttttgcagaaact
ttggcgcatactcttgttgaaggaattcaagaaaaccgtgaagaaatgcaaagccttgtc
tcaagcggaacaatttctgttattgaaggagccgcacagggaaaacttgcaggcaagtcg
ttttgttttacaggcgagcttgtttccatgaagcggcaggatgctcagaatcttgtaaaa
cagaatggcggagccgtgaagtcttctgttgtaaaaggcttgagttttcttgttacaaac
gacacttcttccggctcttcaaaaaacaaaaaagcaatggagcttggaattcctgtcata
gatgaaaaagaattccttgctctaattaaagattag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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