KEGG   Thiohalobacter thiocyanaticus: FOKN1_0050
Entry
FOKN1_0050        CDS       T05229                                 
Name
(GenBank) DNA-directed RNA polymerase subunit omega
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
ttc  Thiohalobacter thiocyanaticus
Pathway
ttc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ttc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FOKN1_0050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ttc03021]
    FOKN1_0050
   03400 DNA repair and recombination proteins [BR:ttc03400]
    FOKN1_0050
Enzymes [BR:ttc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     FOKN1_0050
Transcription machinery [BR:ttc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     FOKN1_0050
DNA repair and recombination proteins [BR:ttc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      FOKN1_0050
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: BAZ92455
UniProt: A0A1Z4VLU9
Position
complement(44684..44953)
AA seq 89 aa
MARITVEDCLDNVDNRFELVLLAAKRARQLARGAEPKLDWENDKPTVMALREIADSLVLP
SNVDSLVKPPEEPAAEAEAEADALPPATE
NT seq 270 nt   +upstreamnt  +downstreamnt
atggcacgcatcacggtggaagattgcctcgataatgtcgataaccgcttcgagctggtc
ctgctggccgccaagcgggcccgccagctggcgcgcggcgccgagcccaaactggactgg
gagaatgacaagcccaccgtgatggccctgcgcgagatcgccgattccctcgttctgccg
agcaatgtcgactccctggtcaagccgccggaagagcctgccgccgaggccgaggcagaa
gccgacgccctgccgcccgcgactgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (24)   

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