KEGG   Thiohalobacter thiocyanaticus: FOKN1_1629
Entry
FOKN1_1629        CDS       T05229                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
ttc  Thiohalobacter thiocyanaticus
Pathway
ttc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ttc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    FOKN1_1629
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ttc03400]
    FOKN1_1629
DNA repair and recombination proteins [BR:ttc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     FOKN1_1629
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      FOKN1_1629
SSDB
Motif
Pfam: ABC_tran UvrA_inter AAA_29 SMC_N AAA_16 UvrA_DNA-bind nSTAND1 AAA_21 RsgA_GTPase Viral_helicase1 AAA_22 ATPase NACHT AAA_18 AAA_33 nSTAND3 AAA_23 AAA_25 DUF87 DnaJ_CXXCXGXG Pilus_CpaD RNA12
Other DBs
NCBI-ProteinID: BAZ94017
UniProt: A0A1Z4VQW3
Position
1707172..1712847
AA seq 1891 aa
MAKPAICVRGARQNNLKHLDLDLPLNEFIVVTGVSGSGKSSLAFDTVYAEGQRRYVETFS
PYARQFLDRMDKPGADRIDGIPPAIAIDQTNPVRTSRSTVGTMTELNDHLKLLFARAAQL
YCRGCGARVRRDTPQSIADSLLQRADASASRASISFTIQVPDNFSLEEVEGLLGQQGYTR
IQRLEGKRLEVVQDRLRLEPAKRERLTEALEAALKHGHGHVNIQPLDDAGNAQTAWRYSS
ELHCADCDIHYAPVIPNSFSFNSPVGACETCRGFGRTQGIDYNLVIPDPARSLADGAIKP
WQTDSYIEAQGDLMRFAHRRGIPTDIPWQELTEEQQRWVIEGEGDWDEGVWYGVQRFFAW
LETKSYKMHIRVLLSRYRAYNECPACRGARLKPEPLLWRLGTRGNTDNALTPDQRFYPPG
MQLSRERLEQLPGLTIHDLMLLPLDRVLRLFEQLQLPKPLDEATELLLAEIRSRLGYLVE
VGLGYLALDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRDIDRMTGVLR
RLRDAGNTLLVVEHDPQIMLAADRILDMGPGPGERGGEAVFFGTPKQLLRNRRSLTAQYL
RGEKSVVDDEDAASPPEPDGPCIEVQGAAAHNLKQIDVRLPLNRLVCVTGVSGSGKSTLM
QTVLYNGLRKLKGSPVDPPGEHRAISGHEHIDAVVLVDQSAIGKTTRSNPASYVGAWNAI
RERFAAHPEARERGYKPGTFSFNSGDGRCPTCGGNGFEHVEMQFLSDVYIRCPDCDGSRY
RPEVLEIRLPPPAGSREGAVSVADVLAMTVTEALDFFAGDAAVQQALEPLAAVGLDYLTL
GQPVPTLSGGEAQRLKLAGHLAKTGGKAKGRGRNKSKGTPRTLFLFDEPTTGLHFDDIHK
LLQAFRRLQAEGHSLVVIEHNLDVIGAADWVIDIGPEGGEGGGELVFAGTPQALMRTADL
NAPSSPRRRGSTDCGSLDPRLRGDDGKGRVASHTGLALLDYAASLAQARVPTDLETTANK
AAPAASRHIEIRHAREHNLKNVTVDIPRGKFSVITGVSGSGKSTLAFDILFNEGQRRYLE
SLNAYARQFVQPAARADVDAILGIPPTVAIEQRTSRGGRKSTVATLTEIHHFLRLLFVKL
GTQYCPDCMIPVEPQTPASILARVMRDYRNKSIRVLAPMVVARKGYYTDLAKWALARGYE
HLRVDGELTPTADWPRLDRYKEHDIELPVGEVKVAPKLEGRLRELIQLGLDLGKGVIQLL
PDSGPGSSRGVTFSIHRACPGCGRSFDELDPRLFSYNSKHGWCQACYGTGLRLAGFDAEQ
TGEETWWNDWWEGEESACPACEGQRLNPVALAVYYRDSSIAELAGLTVSDAGKHFDRLRP
KGREAEIARDILPELRSRLGFLQDVGLGYLTLDRAAPTLSGGEAQRIRLAAQLGSNLRGV
CYILDEPTIGLHPRDNQMLLDTLGRLEGKGNTIVVVEHDEDTIRRAEHVIDLGPGAGVQG
GEVVAAGTVNQLMKNPASLTGRFLAHPLRHPLSERRPVRIKGKGADAFIAIQGARLHNLK
NLDVRFPVGRLIGVSGVSGSGKSTLVREVLQTNLHALLQRGKAKGKKTPALIGCRDIQGI
EHLKRVLEVDQTPIGKTPRSCPATYIGFWDDIRRLFAGTPEARLRGYGPGRFSFNVKGGR
CEACEGQGFKKVEMSFLPDVKVPCEVCNGARFNRETLEVLYKDKSIGEVLAMDVREAVDF
FKAHPKIHRALQLLDDVGLGYLTLGQQSPTLSGGEAQRIKLVSELAKARTDAAEPATRPG
TLYILDEPTVGLHMADVEKLIQVLHRLVGAGHTVVVIEHNLDVLAEADWLIDLGPEGGAG
GGRVVAQGTPESLSASRKSHTARFLKDFLGG
NT seq 5676 nt   +upstreamnt  +downstreamnt
gtggcaaaacccgccatctgcgtgcgcggcgcgcgccagaacaacctcaagcatctcgac
ctcgacctgcctctgaacgagttcattgtcgtcaccggcgtgagcggctcgggcaagtcc
tcgctcgccttcgacaccgtctatgccgagggccagcgccgctatgtggagaccttctcg
ccctatgcgcgccagttcctggaccgcatggacaagcccggcgccgaccgcatcgacggc
atcccgccggcgatcgccatcgaccagaccaacccggtgcgcacctcgcgctccacggtc
ggcaccatgaccgagctgaacgatcacctcaagctgctgttcgcccgcgccgcgcagctg
tactgccgcggctgcggtgcccgggtgcgccgcgacacgccgcagagcattgccgacagc
ctgctgcagcgcgcggatgcctcggcctcgcgcgccagcatcagcttcaccattcaggtt
ccggacaacttcagcctggaggaggtcgagggcctgctcggccagcagggctatacccgc
atccagcgtcttgagggcaaacgcctggaggtggtgcaggataggctgcggctggagccc
gcaaaacgcgagcgtctcaccgaggcgctggaggccgcgctcaagcacggccatgggcat
gtgaacatccagccgctggatgacgcgggtaatgcacagaccgcctggcgctattccagt
gaactgcactgcgccgactgcgacatccactatgcgccggtgatccccaacagcttctcc
ttcaactccccggtcggcgcctgcgagacctgccgcggtttcggccgcacccagggcatc
gactacaacctggtcatccccgatcccgcgcgcagcctggccgacggcgcgatcaagccc
tggcagaccgacagctacatcgaggcccagggtgatctgatgcgcttcgcgcacaggcgc
ggcatccccaccgatatcccctggcaggagctgaccgaggagcagcagcgctgggtgatc
gagggcgagggcgactgggacgaaggtgtctggtacggcgtgcagcgcttcttcgcctgg
ctggagaccaaaagctacaagatgcacatccgggtgctgctgtcgcgctatcgggcctac
aacgagtgccccgcctgtcgcggcgcgcgcctgaagccggaaccgctgctgtggcggctg
ggtacacggggcaataccgataacgcactcacccctgatcagcgcttttatccgcccggc
atgcagttgtcccgcgagcggctggaacagctgcccggcttgaccatccacgacctgatg
ctgctgccgctggaccgcgtcctgcgcctgttcgagcagctgcaactgccgaagccactg
gacgaggccaccgagttgctgctggccgagatccgttcgcgcctgggctacctggtcgag
gtcggcctcgggtatctcgccctggatcggcagtcacgcaccctcagcggtggcgaggtg
cagcgcatcaacctcaccaccgcgcttggcacctcgctggtcaataccctgttcgtgctg
gacgagcccagcatcggcctgcacccgcgcgacatcgaccgcatgaccggcgtactgcgc
cggctgcgcgatgccggcaacaccctgctggtggtcgagcacgacccgcagatcatgctc
gccgccgaccgcatcctggacatgggcccggggccgggcgagcgcggcggcgaggcggtg
ttcttcggcacgccgaaacagttgctgcgcaacaggcgttcgctcaccgcgcaatacctg
cgcggcgagaagtccgtcgtggatgacgaggacgccgcgtcgccgccggagccggacggc
ccctgcatcgaggtgcagggcgccgccgcgcataatctgaaacagatcgacgtgcgcctg
ccgctcaaccggctggtgtgcgtgaccggcgtgtccggctcgggcaagtccaccctgatg
cagaccgtgctctacaacggcctgcgcaagctcaagggcagcccggtggacccgcccggc
gagcaccgggccatcagcggccatgagcatatcgatgcagtggtgctggtggaccagtcc
gccatcggcaagaccacccgctccaacccggccagctatgtcggggcctggaacgccatc
cgcgaacgcttcgctgctcatcccgaggcgcgcgagcgcggctacaaacccggcaccttc
agcttcaactccggcgacggccgctgccccacctgcggcggcaacggttttgaacacgtg
gagatgcagttcctgagcgacgtctacatccgctgccccgactgcgacggcagccgctac
cgccccgaggtgctggagatccggctgccgccgccggccggaagccgggaaggcgcggtc
tcggtggccgatgtgctggccatgaccgtgaccgaggcgctggacttcttcgccggggac
gccgccgtgcagcaggcgctggagccgctggccgccgtggggctggactatctcaccctg
ggccagccggtgccgaccctgtccggcggcgaggcccagcgcctgaagctcgccggccat
ctggccaagaccggcggcaaggcgaagggcaggggcaggaacaagagcaaaggtacaccg
cgcaccctgttcctgttcgacgagcccaccaccggcctgcacttcgacgatatccacaag
ctgctgcaggccttccgccggctgcaggccgagggccactcgctggtggtgatcgaacac
aacctggatgtgatcggcgccgccgactgggtgatcgacatcggtcccgagggcggggag
ggcggcggcgagctggtgttcgccgggacgccgcaggcgttaatgaggaccgctgacctc
aatgctccgtcatccccgcgcaggcggggatccacagactgcggaagcctggatccccgc
ctgcgcggggatgacgggaaaggacgggtggccagccataccggcctggccttactcgac
tacgccgccagcctcgcccaggcccgcgtcccgaccgacctcgaaaccacggcgaataaa
gcggcgcccgccgcctcccgccacatcgagatccgccatgcccgcgaacacaacctgaag
aacgtcaccgtcgacatcccgcgcgggaagttctccgtcatcaccggcgtgtccggctcg
ggcaagtccacgctcgccttcgacatcctgttcaacgagggccagcgccgttacctggaa
tcgctcaacgcctatgcccgccagttcgtgcagccggcggcgcgtgccgacgtggacgcc
attctcggcatcccgcccaccgtggccatcgagcagcgcaccagccgcggcgggcgcaag
tccaccgtggccacgctgaccgagatccatcacttcctgcgcctgctgttcgtcaagctc
ggcacccagtactgccccgactgcatgatcccggtggagccgcagaccccggcctccatc
ctggcccgggtgatgcgcgactatcgcaacaaatcgatcagggtgctcgctccaatggtg
gtggcgcgcaagggctactacaccgacctggccaaatgggcgctggcgcgcggctatgaa
cacctgcgcgtcgatggcgaactcactccgaccgccgactggccgcgcctggatcgctac
aaggagcacgacatcgaactgccggtgggcgaggtgaaggtggcgcccaaactggaaggc
cgactgcgcgagctgatccagctcggcctggacctgggcaagggcgtcatccagctgctg
cccgacagcggccccggcagcagcaggggcgtgaccttctccatccaccgcgcctgcccc
ggctgcggccgcagcttcgacgaactggacccgcggctgttctcctacaactccaaacat
ggctggtgccaggcctgctacggcaccggcctgcgtctggccggcttcgacgcggaacag
accggggaagaaacctggtggaacgactggtgggaaggcgaagagagcgcctgccccgcc
tgcgagggccagcggctcaaccccgtggcgctggcggtctactatcgtgacagctccatc
gccgaactggccggtctgaccgtcagtgacgccggcaagcacttcgaccggctgcgcccg
aagggccgggaggccgagatcgcccgcgacatcttgcccgagctgcgcagccgcctgggg
ttcctgcaggacgtgggcctgggctatctcaccctggaccgcgccgcgccgaccctgtcc
ggcggcgaggcccagcgcatccgcctggccgcccagctcggctccaacctgcgcggggtg
tgctacatcctggacgagcccaccatcggtctgcatccacgcgataatcagatgctgctc
gataccctcggccggctggagggcaagggcaacaccattgtggtggtggagcacgacgag
gacaccatccgccgcgccgagcatgtcatcgacctcggccccggcgccggggtgcagggc
ggcgaggtggtcgccgccggcaccgtcaatcagctgatgaaaaatccggcctcgctcacc
ggcaggttcctcgcccatccgctcaggcacccgctgagtgaacgccgcccggtgcgtatc
aagggcaagggggccgacgccttcatcgcgatccagggcgcgcgcctgcacaacctgaag
aacctggatgtgcgcttccccgtgggccggctgatcggcgtatccggtgtctccggctcc
ggcaagtccaccctggtgcgcgaggtgctgcagaccaacctgcacgccctgctgcagcgc
ggcaaagccaaaggcaaaaagacgccggcactgatcggctgcagggatatacagggcatc
gagcatctcaagcgtgtgctcgaggtggaccagactcccatcggcaagaccccgcgctcc
tgcccggccacctacatcggcttctgggacgacatccgcaggctgttcgccggcaccccc
gaggcacgcctgcgcggctacggcccgggccgtttctccttcaatgtgaagggcgggcgc
tgcgaggcctgcgaggggcaggggttcaagaaggtcgagatgagtttcctgccggacgtg
aaggtgccctgcgaggtgtgcaatggcgcccgcttcaaccgcgagacgctggaggtcctc
tataaggacaagagcatcggcgaggtgctggccatggatgtgcgcgaggccgtggatttc
ttcaaggcccacccgaagatccaccgtgccctgcagctgctggacgacgtcggcctgggc
tacctcaccctgggccagcagagtccgacgctgtccggcggcgaggcccagcgcatcaag
ctggtcagtgaactggccaaggccagaaccgacgcggccgagccggccacccgccccggc
accctctacatcctggacgaacccaccgtcggtctgcacatggccgacgtcgaaaagctc
atccaggtcctgcaccgcctggtcggtgccggccacaccgtggtggtgatcgaacacaac
ctggatgtgctcgccgaggccgactggctcatcgacctgggcccggaaggcggcgcgggc
ggcggccgcgtcgttgcccagggcacaccggaatccctcagtgccagcaggaaatcccac
actgcccgcttcctcaaggattttctgggtggataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (87)   
   KEGG ORTHOLOGY (1)   
   RefGene (84)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (22)   
   Pfam (22)   
All databases (114)   

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