KEGG   Thermogutta terrifontis: THTE_3994
Entry
THTE_3994         CDS       T05034                                 
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
  KO
K03092  RNA polymerase sigma-54 factor
Organism
ttf  Thermogutta terrifontis
Pathway
ttf02020  Two-component system
ttf02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:ttf00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    THTE_3994
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    THTE_3994
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ttf03021]
    THTE_3994
Transcription machinery [BR:ttf03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     THTE_3994
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_Crp_2 HD_5 HTH_23 MarR HTH_11 HTH_IclR Sigma70_r4_2 MarR_2 Arg_repressor HTH_Tnp_ISL3
Other DBs
NCBI-ProteinID: ASV76595
UniProt: A0A286RKU8
Position
4283806..4285278
AA seq 490 aa
MEILQLPLHDLEQRVAQELAENPALEIEESQEQELEEEPRLEEEEERTDTARSDLEREFV
VSEENSAEEFSRLVEMEREIPEYFEEEMSRPSRDRIEEYSERYHDMMANLPDHNPTLQDH
LLDQLAWYDLDPQTRELAEKIISNLDENGYLQTSLQDLLGPNATEEDIQRAEKALKIVQE
LDPPGVGARDLKECLLLQLDPDSPDYNDLKLLISEYLEDIEHNRLPQIAKKTRWSLEHIH
ELLEALRKLNPKPGLQFRSETVLPVTPDVYVEETEDGRFIARVEGGDLPRLQINRGLLQS
LERQNLSKEEREYIKNKIERAKWIIDGIEQRKRTLQRVAQAIIDHQEKFLREGPEHIEPL
KMQQIADKLGIHVTTVSRAVDDKWIQTPQGLFPLRRFFCGGKVNPEGEEVAWDVVRLKVK
ELIDREDKANPLSDEEIVRELAKQGIHVKRRTVTKYREEMGIPSSRERRDWVSFEQKKKA
RQQGSGKQGQ
NT seq 1473 nt   +upstreamnt  +downstreamnt
atggagattttgcaacttccactccatgacctggagcagcgcgtggcgcaggaacttgcg
gaaaaccccgccctggaaatcgaagaatcgcaggaacaggaactcgaggaagagccccgg
ctggaagaagaggaagaacgcacggataccgctcgctccgacttggagcgcgagttcgtc
gtgagtgaggagaattccgcggaagagtttagccggctcgtcgaaatggagagggagatt
ccggagtatttcgaggaggagatgagccgcccttctcgggatcggatcgaggagtactcc
gagcgctatcacgacatgatggcaaatcttcccgaccacaaccccacgctccaggatcac
ctcctcgatcaactggcctggtatgatctcgatcctcaaacccgcgaacttgctgagaaa
atcatttccaacctggatgaaaacggttacctgcaaacgagtctccaggacctgttggga
ccaaatgctactgaggaggatatccaacgggctgaaaaggccctcaaaatcgtgcaggaa
ctcgatccgccgggtgtgggtgcccgcgatcttaaggaatgtttattgctgcaactggat
ccggacagtccagattacaatgacctcaagctgctcatttcagagtacctggaagatatc
gagcacaaccggcttccgcaaatcgccaagaaaacgcgctggtcactggagcacatccac
gaactgttggaagcccttcgcaagctgaatcccaaaccggggctgcagttccgaagtgag
acagtcttgcccgtgactcccgatgtctatgtcgaagagactgaagatgggcgattcatc
gcgagggtggaagggggcgatctgccccgacttcaaatcaaccggggcctgctgcaaagt
ctcgagcggcagaatctgtccaaggaagagagggagtatatcaagaacaagatcgagcgg
gccaaatggatcatcgacgggattgagcagcgcaagcgaacactgcagcgggtcgctcag
gcgatcatcgatcatcaggaaaaattcctgcgggaaggtcccgaacacatcgagccgctc
aaaatgcaacaaatcgccgacaagctcggtatccacgtgacaacggtcagtcgggcggtc
gatgacaaatggattcaaacccctcaggggcttttccccctgcgccgatttttctgcgga
ggaaaggtcaacccagagggtgaagaagtggcctgggacgtggttcggctgaaagtcaag
gagttgattgaccgcgaagataaggccaaccccctcagcgatgaagaaatcgtcagggag
ctcgccaaacagggcatccacgtcaaacgccgaacggtgaccaaatatcgtgaagaaatg
ggaattccgagttcccgggagcggcgggactgggtctcgttcgagcagaagaagaaagcc
cgccagcagggatcgggaaagcagggccagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (55)   

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