KEGG   Thermus thermophilus HB27: TT_C0554
Entry
TT_C0554          CDS       T00170                                 
Name
(GenBank) exoribonuclease II
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
tth  Thermus thermophilus HB27
Pathway
tth03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tth00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TT_C0554
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tth03019]
    TT_C0554
   03016 Transfer RNA biogenesis [BR:tth03016]
    TT_C0554
Enzymes [BR:tth01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     TT_C0554
Messenger RNA biogenesis [BR:tth03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     TT_C0554
Transfer RNA biogenesis [BR:tth03016]
 Prokaryotic type
  tRNA degradation factors
   TT_C0554
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_IclR LexA_DNA_bind HTH_20 HTH_27 RNase_II_C_S1
Other DBs
NCBI-ProteinID: AAS80902
UniProt: Q72K93
Position
538449..540683
AA seq 744 aa
MQETLLAFFKKTGRPHRLEEILHRFGLEKREAKAHLKALVERGLLEKKGSRYFLANRVQG
PLSLHRDGYGFVRLPEGDLFIPPGYTQDAWPGDLVEARVMPPGRDGRPWGVVERVLKRAR
ERLVGTLDFRKGRALLLPDEPNLPELPLAPEGLEGLKRGSRIVAQVHYGKRPYGTFLAYL
GEGEAPETETEAVIAKYGLRAEFPEEVLKEAEAIPLEIPEAELRRREDFRGLRVFTIDGV
DAKDFDDAIHVERLPRGYRIGVHIADVSHYVKEGSLLDQEAFLRGTSVYLPGRVLPMLPE
RLSNGVCSLRPGEDRLVLSVLVDLTEDLEVKRVRFREGVIRSVARLTYTEVEAFAEGFGL
PEEHAFLAEDLRLLLDLTQRMREKRLKEGALDFGFPEVKVEVGEEGELHLIPQAEPKARS
LIEELMLLANRLVAEYLVQKGLPGLFRVHEEPVQDAYEKLRQALARLGYTLPPKLSGHAL
QKALLASRGRPEEPVVAYLVLRSLRLARYAPENLGHFGLAMEHYLHFTSPIRRYPDLVVH
RVLKAALRRTLTPARKARWQEAFPAIAEHASEMERKAEAAERELTKYYMAKWAELHVGER
FLGKVTGVASFGAFVTLPNGVEGLVRLEALGPYTYSEEALALLGPKGRRIRLGDEMEVRI
AGANPRLRQVDFLPVEEAPKKTENGKEKAKEVEMRKVVGPPKDRARDTRPERATVNTIYF
GEWTPKEPEEPRPARTRARRKRRR
NT seq 2235 nt   +upstreamnt  +downstreamnt
atgcaggaaacgcttttagcgtttttcaagaagacgggaaggccgcaccggctggaggag
atcctgcatcggttcggcctggagaagcgggaggccaaggcccaccttaaggccttggtg
gagcgggggcttctggagaagaagggaagccggtacttcctggccaaccgggtccagggg
cccttaagcctccaccgggacgggtacggcttcgtccgcctccccgagggggacctcttc
atccccccggggtacacccaggacgcctggccgggcgacctggtggaggcccgcgtcatg
cccccggggcgggacggaaggccttggggggtggtggagcgggtcctcaagcgggcgcgg
gagcggctcgtggggaccctggacttccggaagggccgcgccctgctcctccccgacgag
cccaacctcccggagcttcccctcgcccccgaggggcttgagggcctgaagcggggaagc
cgcatcgtggcccaggtccactacggcaagcgcccctacgggaccttccttgcgtacctg
ggggagggggaggcccccgagacggagacggaggccgtcatcgccaagtacggcctccgc
gccgagttccccgaggaggtcctgaaggaggcggaggccatccccttggagatccccgag
gcggagcttaggcggcgggaggacttcaggggccttcgggtcttcaccatagacggggtg
gacgccaaggactttgacgacgccatccacgtggagcgtctgcctaggggctaccgcatc
ggggtccacatcgccgacgtctcccactacgtcaaggaggggagccttttggaccaggag
gccttcctaaggggcaccagcgtctacctcccggggcgggtcctccccatgcttcccgaa
aggctttccaacggggtctgctccttgaggccgggggaggaccgcctggtcctctccgtg
ctcgtggacctcacggaggacctcgaggtcaagcgggtccgcttccgggaaggggtcatc
cggagcgtcgcccgcctcacttacaccgaggtggaggccttcgccgagggcttcggcctt
cccgaggagcacgccttcctggcggaggacttgcgcctccttttggacctcacgcagagg
atgcgggagaagcgcctaaaggagggggccttggacttcggcttccccgaggtgaaggtg
gaggtgggggaggagggggagctccaccttatcccccaggcggagcccaaggccagaagc
ctcattgaggagctgatgctccttgccaaccggctggtggcggagtacctggtgcaaaag
ggcctccccggcctcttccgcgtccacgaggagccggtccaggacgcctacgagaagctc
cgtcaggccctggcccgcctgggctataccctcccccccaagctttccggccacgccctg
caaaaggccctcctcgcctcgcggggccgcccggaggagcccgtggtggcctacctcgtc
ctccgctccttgcgcctggcccgctacgccccggagaacctgggccacttcggcctcgcc
atggagcactacctgcacttcacgagccccatccgccgctacccggacctggtggtccac
cgggtgctcaaggcggccctgcgccggaccctcaccccggcgcggaaggcgcggtggcaa
gaggcctttcccgccatcgccgagcacgcttcggagatggaaaggaaggcggaagccgcc
gagagggagctcaccaagtactacatggccaagtgggccgagctccacgtgggggagcgc
tttttggggaaggtcaccggggtggcgagcttcggggccttcgtcactttgcccaacggg
gtggagggcctggtgcgcctcgaggccctggggccctacacctacagcgaggaggctttg
gccctcctcggccccaaagggcggaggatccgcctcggcgacgagatggaggtgcggatc
gccggggccaacccgaggcttaggcaggtggacttcctccccgtggaggaggcgcccaag
aagaccgagaacgggaaggaaaaggctaaggaggtggagatgcgcaaagtggtaggaccc
cccaaggaccgggcccgggacacccgtcccgagcgggccacggtgaacaccatctacttc
ggcgagtggacccccaaggagcccgaggagccccgcccggcgaggacccgggcccgcagg
aagcggcgccgctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (36)   

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