KEGG   Tumebacillus avium: CBW65_08290
Entry
CBW65_08290       CDS       T04874                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
tum  Tumebacillus avium
Pathway
tum03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CBW65_08290
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tum03021]
    CBW65_08290
   03400 DNA repair and recombination proteins [BR:tum03400]
    CBW65_08290
Enzymes [BR:tum01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CBW65_08290
Transcription machinery [BR:tum03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CBW65_08290
DNA repair and recombination proteins [BR:tum03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CBW65_08290
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C
Other DBs
NCBI-ProteinID: ARU61059
UniProt: A0A1Y0ILZ0
Position
1778307..1781969
AA seq 1220 aa
MLDVNNFEYMKIGLASPEKIRSWSHGEVKKPETINYRTLKPEKEGLFCEKIFGPTRDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVTSAGDTPLEYKQLLSEKEYRSYREKYGYAFEAGMGAEAIKKLLL
QVEVEKEVVQLKEELKSAQGQRRNRAIKRLEVMEAFRTSTNAPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLRMYQCGLPKE
MALELFKPFVMKELVAKGLAHNIKSAKRKVERVSAEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAHNIL
NPKDGKPVVTPTQDMVLGSYYLTMDRVGEPGEGRVFHSTTEALLAYDMGQVSLHTRIIIP
AKVLGKTSFTEQQQNAYLITTPGKIIFNEIFPADFPFINSAKQENLLKGTPDMFFIYDKS
SDFRAAAAAVEPQSAVVKGYIGQIIAECFRRYGTTITSETLDKIKAMAFKYSTRAGITIS
VADIIVPKAKYDIITQAEEKVASVTKQFRRGLITDDERYDRVISVWSKAKDEITSVLMGS
LDRYNPIYMMAHSGARGNVSQITQLAGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVRQQDCGTDKGVWAEEIRDGKEVIEEL
FDRIVGRITFQQVVHPETGEVIVDVNEQIDEEMGRTIIGANIERVYIRSVTACRTQHGVC
INCYGRNLATGNMVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQAIITEIDGTVSDIREVKDKREIEVSGNAEVKVYPVPYGSRIRVAVGKVIEA
GDELTEGSIDPKDMLKVKGIHGVQMYLLREVQRVYRLQGVEINDKHVEVMVRQMLRKVRI
IDAGDTTLLPGTYVDIYEFEKANMPVLITGKGDPAVARPALLGITKASLETDSFLSAASF
QETTRVLTEAAIKGKVDRLLGLKENVIIGKLVPAGTGMSRYRNIKIEDGTETDEETLSTE
GGSHDEIEGSELETVETAVE
NT seq 3663 nt   +upstreamnt  +downstreamnt
ttgttggacgtcaacaactttgagtacatgaagatcgggttggcatccccggaaaagatc
cgctcgtggtcgcacggggaagtcaagaaacctgagacgatcaactaccggaccctcaag
cctgaaaaagaaggtctgttctgcgaaaaaatcttcggaccaacccgcgactgggaatgt
cattgcggcaagtacaagcgcgttcgctataaaggcgtcgtttgtgaccgctgcggtgta
gaagtcacgcgtgcaaaagtccgtcgggagcgtatggggcacattgaacttgctgccccg
gtctcccatatctggtacttcaaaggcatcccgagccgcatgggtctcgtgctggacatg
agcccgcgctcgctcgaggaagtcatctacttcgcatcctacgtggtaacctccgcaggc
gacacgccgcttgaatacaagcagttgctctccgagaaggaataccgttcgtaccgcgaa
aaatacggctatgctttcgaagccggcatgggcgctgaagcgatcaaaaagctgctgctc
caagtcgaagtcgaaaaagaagtcgtgcagctcaaggaagagctgaagtctgcacaaggc
cagcgccgcaaccgtgcgatcaagcgtctggaagtcatggaagcgttccgcacctcgacc
aacgcgccgtcttggatgatcctcgacgtgctcccggtcatcccgccggaactgcgcccg
atggtgcagctcgacggcggccgcttcgcgacgtccgacttgaacgacctgtaccgccgc
gtgatcaaccggaacaaccgtctcaagcgtctgcttgacctcggcgctccggacatcatc
gtgcaaaacgagaagcgcatgctgcaggaagctgtagacgcgctgatcgacaacggccgc
cgcggccgtccggtaacgggcccgggcaaccgtccgctcaaatccctttcgcacatgctg
aaagggaagcaaggccgcttccgtcaaaacctgctcgggaagcgcgtcgactactctggc
cgttccgttatcgtagtaggtccgcacctgcgcatgtatcagtgcggtctgccgaaagaa
atggcgctcgagctgttcaagccgttcgtcatgaaggaactcgtcgccaaaggcctcgcg
cacaacatcaagagcgcgaagcgcaaagtggagcgcgtctcggcggaagtgtgggatgtg
ctggaagaggtcatcaaggaacatccggtgctcctcaaccgcgcaccaaccttgcaccgt
ctgggcatccaggcgttcgaaccgacgctggtcgaaggtcgcgcgatcaagctccatccg
ctcgtatgtacggcgtataacgccgactttgacggcgaccagatggcagtccacgttccg
ctgtctgcagaagcacaagcggaagcgcgtctcctgatgctggcagcacacaacatcctc
aacccgaaagacggcaaaccggtcgtcactccgacgcaggacatggttctcggctcgtac
tacctgaccatggaccgcgtaggcgaaccgggcgaaggacgtgtgttccactcgacgaca
gaagcgctgctcgcttacgatatgggtcaagtctcgctgcacacgcggatcatcattccg
gcgaaagtgctcggcaagacctcctttaccgaacagcagcaaaatgcgtacctgatcacc
actccgggcaagatcatcttcaacgagattttcccggctgacttcccgttcatcaactcc
gcgaagcaggaaaacctgctcaaagggacacctgatatgttcttcatctatgacaagtcg
tccgacttccgcgcagcagctgctgctgtggaaccgcagtcggctgtcgtcaaaggctac
atcgggcagatcatcgcggaatgtttccgccgttacggcacgacgatcacttcggagacg
ctcgacaagatcaaagcgatggcgtttaaatactcgaccagagccgggatcaccatctcc
gttgcggacatcatcgttccgaaggcgaagtatgacatcatcacgcaagcggaagagaaa
gtcgcgtcggtcaccaagcagttccgccgcggtctgatcaccgacgacgagcgctatgac
cgcgtcatctccgtctggtcgaaagcaaaagacgagatcacgtccgtgctgatgggctcc
ttggaccgctacaacccgatttacatgatggcgcactccggtgcgcgcggtaacgtatcg
cagatcacccagctcgcagggatgcgcggtctgatggcgaacccgtccggccggatcatc
gagttgccgatcaagtcgaacttccgtgaaggcctcaccgtactcgagtacttcatctcg
acgcacggtgcccgtaaaggtcttgcggataccgcgctccgtaccgccgactccggttac
ctcacccgccgcctcgtcgacgtcgcgcaagacgtcatcgtccgccagcaagactgcggc
accgacaaaggcgtttgggccgaagagatccgcgacggcaaggaagtcatcgaggaattg
tttgaccgcatcgtcggccgcattaccttccagcaagtcgttcatcctgagacgggcgaa
gtgatcgtcgacgtgaacgaacagatcgacgaagagatgggccgcaccatcatcggcgcg
aacatcgaacgcgtctacatccgctctgtcaccgcttgccgcacccagcacggcgtctgc
atcaactgctacggccgcaacctggcgaccggcaacatggtggagatcggcgaggcggtc
ggcatcatcgccgcacagtcgatcggtgaaccgggtacccagctgaccatgcgtacgttc
cataccgggggcgttgcgggtgatgacatcacccaaggtttgccgcgtatccaggaattg
ttcgaagcacgtaacccgaaaggccaagcgatcatcaccgagatcgacggcaccgtatct
gacatccgcgaagtcaaagacaagcgcgagatcgaagtttccggcaatgctgaagtcaag
gtgtatccggttccgtacggctcccgcatccgcgtggccgtaggcaaggtgatcgaggcg
ggcgacgagctgaccgagggttccattgacccgaaagacatgctgaaggtaaaaggcatc
cacggcgtgcagatgtacctgctgcgcgaagtgcagcgcgtataccgtctgcagggcgtt
gagatcaacgacaagcacgttgaggttatggtccgccagatgctgcgcaaagtccgcatc
atcgacgcaggcgacaccaccctgttgccgggcacctatgtcgacatctacgagtttgag
aaggcgaacatgcctgtgctgatcaccggcaagggcgatccggctgtcgcgcgccctgcg
ttgcttggtattaccaaagcatcgctggagaccgactccttcctctctgcagcgtccttc
caggagactacccgtgtcctgaccgaagctgcgatcaaggggaaagtggaccgtctgctc
ggcctcaaagagaacgtcatcatcggtaagctggttccggccggcaccgggatgtcccgt
taccgcaacattaagatcgaagacggcaccgagacggatgaggaaactctgtccaccgag
ggcggatcccacgacgagatcgaaggttccgagctggaaacggtcgaaacggctgttgaa
taa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (30)   

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