KEGG   Tupaia chinensis (Chinese tree shrew): 102471638
Entry
102471638         CDS       T02978                                 
Symbol
MSH2
Name
(RefSeq) mutS homolog 2
  KO
K08735  DNA mismatch repair protein MSH2
Organism
tup  Tupaia chinensis (Chinese tree shrew)
Pathway
tup01524  Platinum drug resistance
tup03430  Mismatch repair
tup05200  Pathways in cancer
tup05210  Colorectal cancer
Brite
KEGG Orthology (KO) [BR:tup00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    102471638 (MSH2)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    102471638 (MSH2)
  09162 Cancer: specific types
   05210 Colorectal cancer
    102471638 (MSH2)
  09176 Drug resistance: antineoplastic
   01524 Platinum drug resistance
    102471638 (MSH2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tup03400]
    102471638 (MSH2)
DNA repair and recombination proteins [BR:tup03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     102471638 (MSH2)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_II MutS_I MutS_IV AAA_27 FeoA
Other DBs
NCBI-GeneID: 102471638
NCBI-ProteinID: XP_006162412
Position
Un
AA seq 934 aa
MAVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTVHGEDAVLAAREVFKT
QGVIKYMGPAGAKDLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLA
FKASPGNLSQFEDILFGNNDLSASIGVVGVKMSTVDGQRQVGVGYVDSIQRKLGLCEFPD
NDQFSNLEALLIQIGPKECILPGGETAGDMGKLRQVIQRGGILITERKRTDFSTKDIYQD
LNRLLKGKKGEQLNSAVLPEMENQVAVCSLSAVIKFLELLSDDSNFGQFELTTFDFSQYM
KLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTSQGQRLVNQWIKQPLMDKNRIEERL
NLVEAFVEDAELRQSLQEDLLRRFPDLNKLAKKFQRQAANLQDCYRLYQGINQLPNVIQA
LEKYEGKHQSLLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSE
LREIMDDLEKKMQSTLISAARELGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFS
TVDIQKNGVKFTNSKLSSFNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLA
QLDAVVSFAHVSNGAPVPYVRPVILEKGQGRIILKASRHACVEVQDEVAFIPNDVHFEKD
KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISDYIATKIGAFCMF
ATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHV
IECAKQKAMELEEFQNIGESQGYDETEPAAKKCYLEREQGEKIIQEFLYKVKQVPFTEMS
EEDITIKLKQLKAEVIAKNNSFVNEIISRIKVTT
NT seq 2805 nt   +upstreamnt  +downstreamnt
atggcggtgcagccgaaggagacgctgcaactggagagcgcagccgaagtcggctttgtg
cgcttctttcagggcatgccggagaagccgaccaccacggtgcgccttttcgaccgcggc
gacttctatactgtgcacggcgaggacgcggtgctagccgcccgggaggtattcaagacc
caaggggtgatcaagtatatggggcctgcaggtgcaaaagatctccagagtgttgtgctt
agtaaaatgaattttgagtcttttgtaaaagatcttcttttggttcgtcagtatagagtt
gaagtttataagaatagagctggaaataaggcatctaaggaaaatgattggtatttggca
tttaaggcttctcctggcaatctttctcagtttgaagacattctctttggtaacaatgat
ttgtcagcttctattggtgtggtaggtgtcaaaatgtccacagttgatggccaaagacag
gttggagtaggatatgttgattccatacagaggaagctaggactgtgtgagttccctgat
aacgatcagttctccaatcttgaggcacttctgattcagattggaccaaaggaatgcatc
ttaccaggaggagagactgctggagacatggggaaactgaggcaggttattcagagagga
ggaattttgattacagaaaggaaaagaactgacttttccacaaaagacatttatcaggac
ctcaaccggttgttgaaaggcaaaaagggagaacagctgaatagtgctgttttgccagaa
atggagaatcaggttgcagtttgttcattgtcagcagtaatcaagtttttagaactctta
tcagatgattcaaactttggccagtttgaacttactacttttgacttcagccaatacatg
aaactggatattgcagcagtcagagcccttaacctattccagggttctgttgaagatacc
actggctctcaatctctggctgcgttgctgaataaatgtaaaacatctcaaggacagaga
ctagttaatcagtggattaagcagcctctcatggacaagaacagaatagaagagagatta
aatttagtggaagcctttgtagaagatgcagaactgaggcagagtttacaagaagactta
cttcgtagattcccagatcttaacaaacttgcgaagaaatttcaaagacaagcagcaaac
ttacaagattgttaccgactctatcagggtataaatcaacttcctaatgtaatacaggct
ctggaaaaatatgaaggaaaacaccaatcattgttgttggcagtttttgtgactcctctt
attgatcttcgttctgatttctccaagtttcaggaaatgatagaaacaactttagatatg
gatcaggtggaaaaccatgagttccttgtaaaaccttcatttgatcctaatctgagtgaa
ttaagagaaataatggatgacttggaaaagaagatgcagtcaacattaataagtgcagcc
agagaacttggcttggaccctggcaaacaaatcaaactggattccagtgcacagtttgga
tattactttcgtgtgacctgtaaagaagaaaaagtccttcgtaacaataaaaacttcagt
acagtagacatccagaagaatggtgttaaatttaccaacagtaaattatcttctttcaat
gaagaatataccaaaaataaaactgaatatgaggaagcccaggatgccattgttaaagaa
attgtcaatatttcttcaggctatgtcgaaccaatgcagacacttaatgatgtgttagct
cagctagatgctgttgtcagctttgctcatgtgtcaaatggagcacctgttccatacgta
cgaccagtcattttggagaaaggacaaggaagaattatattaaaagcatccagacatgct
tgtgttgaagttcaagatgaagttgcatttattcctaatgatgtacactttgaaaaagat
aaacagatgttccacatcattaccggccccaatatgggaggtaaatcaacatatattcgt
cagactggtgtgattgtactcatggcccaaattgggtgttttgtgccctgtgagtcagcg
gaagtatccattgtggactgcatcttggctcgggtaggggctggtgacagtcagttaaaa
ggagtatccacgttcatggctgaaatgttggaaactgcttctatcctcaggtctgcaacc
aaagattctttaataatcatagatgaattgggaagaggaacttctacctatgatggattt
gggttagcatgggctatatcagattacattgcaacaaagattggtgctttttgcatgttt
gcaactcattttcatgaacttactgccttggccaatcagataccaactgtgaataatcta
catgttactgcactaaccacagaagagaccttaactatgctctatcaagtgaaaaaaggt
gtctgtgatcagagttttggaattcatgttgcagagcttgctaattttcctaggcatgta
atagagtgtgctaaacaaaaagccatggaacttgaggaatttcagaatattggagaatca
caaggctatgatgaaacagaaccagcagcaaagaagtgctatctggaaagagagcaaggt
gaaaaaattattcaggaatttctgtacaaggtgaagcaagtgccctttaccgaaatgtca
gaagaagacatcacaataaagttaaaacagctgaaagcagaggtgatagcgaagaataat
agttttgtaaatgaaattatttcacgaataaaggttactacatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (31)   

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