KEGG   Tupaia chinensis (Chinese tree shrew): 102472744Help
Entry
102472744         CDS       T02978                                 

Gene name
ATG16L1
Definition
(RefSeq) autophagy related 16 like 1
  KO
K17890  autophagy-related protein 16-1
Organism
tup  Tupaia chinensis (Chinese tree shrew)
Pathway
tup04136  Autophagy - other
tup04140  Autophagy - animal
tup04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:tup00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    102472744 (ATG16L1)
   04136 Autophagy - other
    102472744 (ATG16L1)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    102472744 (ATG16L1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:tup04131]
    102472744 (ATG16L1)
   03029 Mitochondrial biogenesis [BR:tup03029]
    102472744 (ATG16L1)
Membrane trafficking [BR:tup04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    102472744 (ATG16L1)
 Others
  Rab GTPases of specific organelles
   Auto phagosome
    102472744 (ATG16L1)
Mitochondrial biogenesis [BR:tup03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    102472744 (ATG16L1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: ATG16 WD40 ANAPC4_WD40 eIF2A
Motif
Other DBs
NCBI-GeneID: 102472744
NCBI-ProteinID: XP_006171211
Position
Un
AA seq 607 aa AA seqDB search
MSSGLRAADFPRWKRHIAEELRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAQKLQAEK
HEMPNRHEISPGHDGTWSDSQLQEMAQLRMKHQEELTELHKKRGELAQLVIDLNNQMQQK
DREMQMNEAKIAECLQTISDLETECLELRSKLQDLERANQTLKDEYDALQITFTALEEKL
RKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI
EVIVDETSDHAEETSPVRTISRAATKRLSQPAGGLLDSITNIFGRRSVSSLPVPQDNADT
HPSSGKEVRVPTTALCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKG
ALSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDN
ARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSES
IVREMELLGKITALDLNPERTELLTCSRDDLLKVIDLRTNAIKQTFSAPGFKCGSDWTRV
VFSPDGSYVAAGSAEGSLYVWSMLTGKVEKVLSKQHSSSINAVAWSPSGLHVVSVDKGSK
AVLWAQH
NT seq 1824 nt NT seq  +upstreamnt  +downstreamnt
atgtcgtcgggcctccgcgccgccgacttcccccgctggaagcgccacatcgcggaggag
ctgcggcgccgggaccggctgcaacggcaggcgttcgaggagatcatcctgcagtataac
aagttgctggagaagtcagatctgcattcggtgctggcccagaaactgcaagctgaaaag
catgagatgcccaacaggcacgagatcagtccaggacacgacgggacatggagtgatagt
cagctacaagaaatggcccagctgaggatgaagcaccaggaagaactgactgagttgcac
aagaagcgtggcgagttagcgcagctggtgattgacctgaataaccaaatgcagcagaag
gacagggagatgcagatgaatgaagcaaaaattgccgagtgtttgcagacgatctccgac
ctcgagacggagtgcctggaactgcgcagcaagctgcaggacctcgagcgagccaaccag
accctgaaggatgagtacgacgccctgcagatcacgttcactgccttggaggagaagctg
aggaaaaccactgaggagaaccaggagctggtcaccaggtggatggccgagaaagcccag
gaagccaatcgcctgaacgcagagaatgaaaaggactccaggaggcggcaagcccggctg
cagaaagagctcgcagaggccgcaaaggaaccgctaccagtggaacaggacgatgacatt
gaagtcattgtggacgagacctcagatcacgctgaggagacctctcccgtgcgaaccatc
agcagggcagccactaagcgactctcgcagcctgctggaggccttctggattctatcact
aatatctttgggagacgctctgtctcttccctcccggtcccccaggataacgcggatacg
cacccgagttccggtaaagaagtgagggtgcccacgactgccctgtgtgtctttgatgca
cacgatggggaagtcaacgccgtgcagttcagtccaggttcccggttattggccacggga
ggcatggaccggagggttaagctttgggaggtgttcggagacaaatgtgagttcaagggt
gctctctccggcagtaatgcaggaattacaagtattgaatttgatagtgctggatcttac
ctcctagcagcatcaaacgattttgcaagccgaatctggactgtggatgattatcggtta
cggcacacgctcacaggacacagtgggaaagtgctgtcggcgaagttcctgctggacaac
gcacgcatcgtctcaggaagtcacgaccggaccctcaaactctgggatctacgcagcaaa
gtctgcataaagaccgtgtttgcagggtccagttgcaatgatatcgtctgcacggagcag
tgcgtgatgagtggacattttgacaagaagattcgtttctgggatatccggtcagagagt
atagtccgagagatggagctgttggggaagatcactgcactggacttgaacccagaaagg
actgagctgctgacctgctcccgggatgacctgctgaaagtgattgatctgcgaacaaat
gccatcaagcagacgttcagtgcacctgggttcaagtgtggctctgattggaccagagtt
gtcttcagccccgatggtagttacgtggcagcaggctcggccgagggctccctctatgtc
tggagcatgctcactgggaaggtggagaaggtgctttcaaagcagcacagctcgtcgatc
aacgcggtggcctggtccccgtctggcttgcacgtggtcagcgtggacaaaggcagcaaa
gccgtgctgtgggcacagcactga

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