KEGG   Tupaia chinensis (Chinese tree shrew): 102496357
Entry
102496357         CDS       T02978                                 
Symbol
ALYREF
Name
(RefSeq) Aly/REF export factor
  KO
K12881  THO complex subunit 4
Organism
tup  Tupaia chinensis (Chinese tree shrew)
Pathway
tup03013  Nucleocytoplasmic transport
tup03015  mRNA surveillance pathway
tup03040  Spliceosome
tup05014  Amyotrophic lateral sclerosis
tup05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:tup00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102496357 (ALYREF)
  09122 Translation
   03013 Nucleocytoplasmic transport
    102496357 (ALYREF)
   03015 mRNA surveillance pathway
    102496357 (ALYREF)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    102496357 (ALYREF)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    102496357 (ALYREF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tup03019]
    102496357 (ALYREF)
   03041 Spliceosome [BR:tup03041]
    102496357 (ALYREF)
Messenger RNA biogenesis [BR:tup03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     102496357 (ALYREF)
    TREX complex
     102496357 (ALYREF)
Spliceosome [BR:tup03041]
 Complex C
  Other components
   EJC/TREX
    102496357 (ALYREF)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    102496357 (ALYREF)
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 102496357
NCBI-ProteinID: XP_006172174
Position
Un
AA seq 207 aa
MAAYARRGTHGPGPVVAVLPLQPKQLPDKWQHDLFDSGFGGGAGVGTGGKLLVSNLDFGV
SDADIQVLFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN
IQLVTSQIDTQRRPVQSVNRGGMTRTRGSGGFGGGGGTRRGRRGGARGSRGASRGRGRGT
GRSSKQQLSAEELDAQLDAYNARMDTS
NT seq 624 nt   +upstreamnt  +downstreamnt
atggcagcctacgcccggagggggactcacgggcctggtcccgttgtcgcggttcttccc
cttcagcccaaacagctccccgacaagtggcagcacgaccttttcgacagcggcttcggg
ggtggtgccggcgtggggacggggggcaaactgctggtgtccaatctggattttggagtg
tcagacgccgatatccaggtgctctttgcggagttcggaacgctgaagaaggcggccgtg
cactacgaccgttctggccgcagcttggggacagcagacgtgcactttgagcggaaggca
gatgccctgaaggccatgaaacagtacaacggggtccctctggatggccgccccatgaac
atccagcttgtcacatcacagatcgacacacagcggaggcctgtgcagagtgtgaacaga
ggcggcatgaccagaacccgaggctccggcggcttcggcggcgggggtggcacccggaga
ggccgccgtgggggggcgcgggggagccgtggcgccagccggggaagaggcagaggcacc
ggcaggagttccaagcagcagctctccgcagaggagctggacgcccagctggacgcctac
aacgccaggatggacaccagctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (28)   

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