KEGG   Turicibacter sp. H121: AT726_06635
Entry
AT726_06635       CDS       T04254                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
tur  Turicibacter sp. H121
Pathway
tur03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tur00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AT726_06635
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tur03021]
    AT726_06635
   03400 DNA repair and recombination proteins [BR:tur03400]
    AT726_06635
Enzymes [BR:tur01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AT726_06635
Transcription machinery [BR:tur03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AT726_06635
DNA repair and recombination proteins [BR:tur03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AT726_06635
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RPOC_hybrid ApbA_C
Other DBs
NCBI-ProteinID: AMC08611
UniProt: A0A0X1TKJ8
Position
1388604..1392329
AA seq 1241 aa
MVDVNKFKYMKIGLASSDTIRKWSYGEVKKSETINYRTLKPEKDGLFCERIFGPQKDCEC
ACGKYKRIRHEGIVCDRCGVEVTVAKVRRERMGHIELAAPVAHIWYVKGIPSRMGLLLNM
SPRELEEVIYFVNYVVIDPGKTDLIKQKVLTEKEYREAYEKWGNAFQVGMGAEAIKKLLE
SLDLDKLAKELRSELKIAQGQKRGKVIKRLEVVESFRNSGNRPDWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLIRYLEIGAPNIIINNEKRMIQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKMYQCGLPKE
MALELFKPFVMKELVERDLAQNIKSAKKMIERMDDALWDVVEDVIREHPVLLNRAPTLHR
LGIQAFEPKIVEGRAIRLHPLVTTAFNADFDGDQMAVHVPLSQEAQAEARLLMLAANNIL
NPKDGKPVVTPSQDMVLGNYYLTMEEAGAIGEGNIYKDTNELMMAYANGYVTLHSRIALD
AKALNNMTFTEEQNSKYIITTLGKVIFNGILPKTFPYLNEPTMTNLQGATPTKYFVEKGT
DIKAHLADVKIVSPFKKKFLGDIISEVFRIYKTTETSRMLDRLKDLGFKYSTVAGISVGV
ADVVVSSKKKDLLKQGDDKVAQIQEFYNRGLLTDDERYRLVIDVWAKVKDEIQHVLMNEL
PADNHIYMMSDSGARGNASNFTQLAGMRGLMANPSGKTIELPIKSSFREGLTVTEFFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDKGQYITELKQRGQTVETLF
DRIVGRYTAKPIYHPVTKEKIAERNVYITDELGKAIIDAGIEGVDIRTIYSCNAQKGVCK
KCYGQNLATGKEVEVGEAVGIMAAQSIGEPGTQLTMRTFHTGGVAGADITQGLPRIQELF
EARNPKGRAIIAEIDGVITTIKANTKNRYEITLTNKLESRNYLLPYGVQPLVAEGDEVLA
GDMLTEGSIDPKELLRVKDVAAVQAYILKEVQNVYRAQGVELSDKHIEIMVHQMMKKVKV
IDGGDTDILPGSLIDMTHYTRVNAAAIMRGKRPAVGIPTILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKVDELIGLKENVIIGKLIPAGTGVLREDHIQPVHKIEDEVEEDILPF
DLTSDSKVSNDLVNLSLEDDLDELDIELDFDETDFLDAEDE
NT seq 3726 nt   +upstreamnt  +downstreamnt
ttggtagatgttaacaagtttaagtatatgaagatcggtttagcatcttcagatacaatc
cgtaaatggtcttatggtgaagttaaaaaatctgagacaatcaactatcgtacattaaaa
cctgaaaaagatggattattctgtgagcgtatcttcggtccacaaaaagactgtgagtgt
gcttgtggtaaatataaacgtattcgccacgaagggatcgtttgtgatcgctgtggtgta
gaagtaacagtagcaaaagttcgtcgtgaacgtatgggtcacatcgaacttgctgcacct
gttgcacatatttggtatgtaaaaggtattccaagccgcatgggactattattaaatatg
tctcctcgtgagcttgaagaagttatctactttgtaaactatgttgtaattgacccaggt
aaaactgatttaattaaacaaaaagtattaactgaaaaagaatatcgtgaagcatatgaa
aaatgggggaatgcattccaagtaggtatgggtgctgaagccattaaaaagttattagaa
tcattagatttagataaattagcgaaagaattacgttctgaattaaaaattgcacaaggt
caaaaacgtgggaaagttatcaaacgtttagaagttgtggaatcattccgtaattcagga
aaccgtcctgattggatgatcttagacgtattaccggtaattccaccagaattacgtcca
atggttcaattagatggtggacgttttgcaacatctgacttaaatgatttatatcgtcgt
gttattaaccgtaataaccgtttaattcgttatttagaaatcggtgcgcctaatattatc
ataaacaatgagaaacgtatgattcaagaagcagtagatgctttaattgataatggtcgt
cgcggacgtccagttactggcccaggaaaccgtccattaaaatcactttctcacatgtta
aaaggtaaacaaggtcgtttccgtcaaaacttattaggtaaacgtgttgactactctgga
cgttctgtaatcgtagtaggaccagacttaaagatgtatcaatgtggattaccaaaagaa
atggctcttgagttattcaaaccattcgttatgaaagaattagtggaacgtgatttagca
caaaatattaagagtgctaagaaaatgattgagcgcatggatgatgcattatgggacgtt
gtagaagacgtaattcgtgagcatccagtattattaaaccgtgccccaacattacaccgt
ttaggtatccaagcgttcgaacctaaaattgtagaaggacgcgcaattcgtcttcaccct
cttgtaacgacagcatttaatgccgacttcgatggtgaccagatggcggttcacgttcct
ttatctcaagaagcacaagctgaagctcgtttattaatgcttgctgcaaataacatctta
aacccgaaagatggtaaaccagtcgttactccatctcaggatatggtattaggaaactac
tacttaacgatggaagaagcaggagcaattggtgaaggtaatatctataaagatacaaat
gagttaatgatggcttatgcaaacggatatgtaacattacactctcgtattgcattagat
gctaaagcattaaataacatgactttcactgaagagcaaaatagcaaatatatcatcaca
actttaggaaaagttatcttcaatggtattttacctaaaacattcccttacttaaatgag
ccaacaatgacgaacttacaaggtgctacaccaactaagtacttcgttgaaaagggaaca
gatattaaagcacacttagcggatgttaaaattgtttctccattcaagaaaaaattctta
ggggatatcatttctgaagtattccgtatttataaaacaactgaaacatcacgtatgtta
gaccgcttaaaagacttaggatttaagtattctactgttgccggaatttctgtaggggtt
gctgacgtagtcgtatcttctaagaaaaaagatttattaaaacaaggtgacgataaagtt
gctcaaattcaagagttctataaccgtggtttattaactgatgatgaacgttatcgttta
gttattgatgtttgggcgaaagtaaaagatgaaattcaacatgtattaatgaatgagtta
cctgctgataaccacatttacatgatgagtgattctggagcccgtggtaacgcatcgaac
tttacgcagttagccggtatgcgtggattaatggccaacccatctggtaaaacaatcgag
ttaccaatcaaatcttcattccgtgaaggtttaacagtaactgagttcttcatctctacc
catggtgctcgtaaagggttagcggatacagccttaaaaacagccgattcaggttactta
actcgtcgtttagtagacgtagcacaagatgtgatcgttcgtgaagatgactgtggtaca
gataaaggacaatatatcactgaattaaaacaacgtggtcaaacagtggaaacattattt
gatcgtatcgttggacgttatacagcaaaacctatctatcatccggtaacgaaagaaaag
attgcagaacgcaatgtatatattacagatgaattaggtaaagctatcatcgatgctggt
attgaaggagtagatatccgtactatttactcatgtaatgctcaaaaaggtgtatgtaaa
aaatgttatggtcaaaacttagcaactggtaaagaggttgaagttggggaagctgttggt
atcatggctgctcaatcaatcggtgagccaggtactcagttaacgatgcgtacattccat
acaggtggggtagccggagccgatattacacaaggtttacctcgtatccaagagttattc
gaagcgcgtaatccaaaaggacgtgcaatcattgctgaaatcgatggtgtaattactaca
attaaggcaaatactaaaaaccgttatgaaattacattaacaaataaattagaaagccgt
aactacttattaccttacggggtacaaccattagtagctgaaggtgatgaagtattagct
ggagacatgttaactgaagggtcaatcgatcctaaagaattattacgtgttaaagatgtt
gccgctgtacaagcatacatcttaaaagaagtgcaaaatgtataccgtgcacaaggggta
gaattatcagataagcatattgagatcatggttcatcaaatgatgaaaaaagttaaagtt
atcgacggtggagatactgacattttaccaggatcattaattgatatgactcattatacg
cgtgtaaatgctgctgcaatcatgcgtgggaaacgccctgcagtaggtattccaacaatc
ttaggtatcacaaaagcatctcttgaaacagaatcattcttatctgctgcatcattccag
gaaacaactcgcgttcttacagatgctgcaatcaaaggtaaagtggatgaattaatcgga
ttaaaagaaaatgttatcattggtaagttaatcccagccggaacaggtgttttaagagaa
gatcatattcaaccggtacataagattgaagatgaagttgaagaggatattttaccattc
gatttaacttcagattcaaaagtatcaaatgatttagtaaatctttcattagaagacgat
ttagatgaattagatatcgaattagatttcgatgaaactgattttttagacgctgaagat
gaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (50)   

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