KEGG   Thiocystis violascens: Thivi_0747
Entry
Thivi_0747        CDS       T02138                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
tvi  Thiocystis violascens
Brite
KEGG Orthology (KO) [BR:tvi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tvi03016]
    Thivi_0747
Enzymes [BR:tvi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     Thivi_0747
Transfer RNA biogenesis [BR:tvi03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    Thivi_0747
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS
Other DBs
NCBI-ProteinID: AFL72799
UniProt: I3Y731
Position
complement(814277..814756)
AA seq 159 aa
MRAALAEPLPDLVPEQARATHPLDLHLTLVFLGELAPDRLRCVESAATDIGVPAFALSLD
RLGYFARSQILWRGPTSIPAPLRMLVLTLQTRLQACGIAPEQRAYRPHMTLARKVRAPPP
AVSSAPVEWTVSDVVLAAGRGGTVPRYEIRQRWMLDARP
NT seq 480 nt   +upstreamnt  +downstreamnt
gtgcgcgcggcgctcgcggagccgcttcccgacctggttccggagcaggcgcgggcgacc
catccgctggatctgcatttgactctggtctttctgggcgagttggcgccagaccggttg
cgttgcgtggaatcggcggccaccgacatcggtgtacccgcgttcgcgctctctctggat
cgcctcggatattttgcccgatcccagattttatggcgtggaccgacgtcgattccagcg
cccttgcggatgctcgttctgaccctgcagacgcgactccaggcgtgcgggatcgcgccg
gagcagcgtgcgtaccggccgcatatgacgctggcccgcaaggtccgagcgccgccaccg
gcggtgtcgagcgcgccggttgaatggacggtgagcgatgtcgtgctggccgctggacgc
gggggaacggtaccgcgttacgagatccggcagcgctggatgctggacgcgcgcccctaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (20)   

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