KEGG   Thioalkalivibrio versutus: TVD_13015
Entry
TVD_13015         CDS       T03959                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
tvr  Thioalkalivibrio versutus
Pathway
tvr03030  DNA replication
tvr03410  Base excision repair
tvr03420  Nucleotide excision repair
tvr03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:tvr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TVD_13015
   03410 Base excision repair
    TVD_13015
   03420 Nucleotide excision repair
    TVD_13015
   03440 Homologous recombination
    TVD_13015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tvr03032]
    TVD_13015
   03400 DNA repair and recombination proteins [BR:tvr03400]
    TVD_13015
Enzymes [BR:tvr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     TVD_13015
DNA replication proteins [BR:tvr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     TVD_13015
DNA repair and recombination proteins [BR:tvr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     TVD_13015
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TVD_13015
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1
Other DBs
NCBI-ProteinID: AKJ96221
UniProt: A0A0G3GBM8
Position
2799874..2802576
AA seq 900 aa
MSQPPLVLVDGSSYLFRAFHALPPLTAPDGAPTGAMIGVANMLRKLRADYGPEHMAVVFD
AKGKTFRDDIYPEYKATRPPMPDELAAQIEPLHELVRAMGLPLLCVGGVEADDVIATLAD
QAARAGHAVVISTGDKDLAQLVDDRITLVNTMSGVTLDPDGVREKFGVAPEQIVDYLALM
GDSVDNIPGVDKVGPKTAAKWIAKYGDLDTILEQADDIGGKIGENLRAATDRLPTSRELI
TVKRDVPLDVGPDDLAIQEPDHDRLLEMVRRYGFTRWRAELEGGNGDTAADNPGPAQTKG
DYQTVREEADFAGLLERLDKAERVAFDTETTSLDAMRAELVGMSFAFEPGTAYYLPLAHT
GPDADPQLPFDTTLERLKPWLESPGHGKLGHHLKYDRNVLGNHGITLRGIVDDTLLESFC
LDAGANRHDLDSLAERHLDYKTTHYEDVAGKGAKQIPFAEVDIGIATDYAGEDADICLQL
DAVFQPRLKEAEGPAFVYREIEMPLVPVLADIERAGVKVDPDQLGAQSQALLTEMERIER
EAFEEAGGEFNLGSPKQIQEILFERLGLPVLRRTPKGQPSTAEDVLEQMAGDYALPRLIL
EHRGLSKLRSTYTETLPRRIHPKTGRVHTSYHQSGAATGRLSSSEPNLQNIPVRTEAGRR
IRQAFIAEAGHQLLAADYSQIELRIMAHLSQDAGLLRAFAEGQDIHRATAAEVFGTEPDQ
VSNDQRRAAKAINFGLIYGMSAWGLARNLGIEQGEAREYIDRYFNRYPGVHDYMEKARAS
GRENGYVETLFGRRLYLPEINSRNGARRQQSERVAINAPMQGTAADIIKRAMVRVANDLS
EARIDARMIMQVHDELVFEVADDALDALTDLVRQAMSGAADLDVELVVDIGVGANWDDAH
NT seq 2703 nt   +upstreamnt  +downstreamnt
atgtcgcaaccgcccctcgtcctggtcgacggctcctcctacctgttccgcgcgttccac
gccctgccgccactgaccgcgccggatggcgccccgaccggcgcgatgatcggcgtggcc
aacatgctgcgcaagctgcgcgcggactacgggccggagcacatggcggtggtgttcgac
gccaagggcaagaccttccgcgacgacatctaccccgaatacaaggccacccgccccccg
atgccggatgagctggcggcccagatcgagcccctgcacgagctggtccgggcgatgggc
ctgccgctgctgtgcgtcgggggcgtcgaggccgacgacgtgatcgcgaccctggccgac
caggcggcacgcgccggccacgcggtggtgatctccaccggcgacaaggatctcgcccag
ctggtggatgaccgcatcacgctggtgaacaccatgagcggcgtcaccctggacccggac
ggcgtgcgggagaagttcggcgtcgccccggagcagatcgtcgattatctcgcgctaatg
ggcgacagcgtcgacaacatcccgggcgtcgacaaggtcggcccgaagaccgcggccaag
tggatcgcgaagtacggcgacctcgacaccatcctcgagcaggccgacgacatcggcggc
aagatcggcgagaacctgcgggcggccaccgaccggttgccgacctcgcgcgagctgatc
acggtcaagcgcgatgtcccgctggatgtcggccccgacgacctcgcgatccaggagccg
gaccatgaccgcctgctggagatggtgcgccgctacggcttcactcgctggcgcgcggaa
ctggagggcggcaacggcgataccgccgccgacaaccccggacccgcgcagacgaagggc
gactaccagaccgttcgcgaagaggccgatttcgctgggctactggagcgcctggacaag
gccgagcgcgtggccttcgacaccgagaccaccagcctggatgcgatgcgtgccgaactg
gtcggcatgtcgttcgcgttcgagccgggtaccgcgtactacctgccgctggcccatacc
gggccggatgccgatccacagttaccgttcgacacgacgctggagcgcctgaagccgtgg
ctggagtccccgggccacggcaagctcggccatcacctgaagtacgaccgcaacgtgctg
ggcaatcacggcatcaccctgcggggcatcgtcgatgacacgctgctggagtccttctgc
ctggacgccggcgccaaccgccacgacctggattccctggccgagcgccacctggactac
aagaccacgcactacgaggacgtggcgggcaagggcgcgaagcagatcccgttcgccgag
gtggatatcggcatcgccaccgattacgccggcgaggatgccgacatctgcctgcagctg
gatgcggtgttccagccgcgcctgaaggaagcggaaggcccggccttcgtctaccgcgag
atcgagatgccgctggtcccggtcctggcggatatcgagcgtgcaggcgtgaaggtcgac
ccggaccagctcggcgcgcagagccaggcgctgctgaccgagatggaacgtatcgagcgc
gaggccttcgaggaggctggtggcgagttcaacctcggctcgcccaagcagatccaggag
atcctgtttgaacgcctggggctgccggtgctgcggcgcacgcccaagggccagccctcg
accgccgaggacgtgctggaacagatggcgggtgactacgccctgccacgcctgatcctg
gagcaccgcgggctgtccaagctgcgcagcacctacaccgagaccctgccccggcgcatc
caccccaagaccgggcgggtgcatacgtcctatcaccagtcgggcgcggccaccggacgc
ctgtcgtcgtcggaaccgaacctgcagaacatcccggtgcgcaccgaggccgggcggcgc
atccggcaagcgttcatcgccgaagcgggccaccagctgctggcggccgactactcgcag
atcgagctgcgcatcatggcccacctgtcgcaggacgcgggcctgctgcgcgccttcgcc
gaggggcaggacatccaccgcgcgaccgccgccgaggtctttggcacagagccggaccag
gtctcgaacgaccagcgccgggcggccaaggcgatcaacttcggcttgatctacggcatg
tccgcctgggggctggcgcgcaacctcggcatcgagcagggcgaggcgcgcgaatacatc
gaccgctacttcaatcgctatcccggcgtgcacgactatatggagaaggcgcgcgccagc
gggcgcgagaacggctatgtcgagacgctgttcggtcgccgcctgtacctgccggagatc
aacagtcgcaacggcgcccggcgccagcagtccgagcgcgtcgcgatcaacgccccgatg
cagggcacggccgccgacatcatcaagcgcgcgatggtacgggtcgcgaacgacctgtca
gaggcgcgaatcgatgcccgcatgatcatgcaggtacacgatgaactcgtattcgaagtc
gccgacgacgcactggatgcgttgaccgacctcgtgcgccaggccatgagcggcgccgcc
gatctcgacgtggagctggtggtggatatcggcgtcggcgccaactgggacgatgcgcac
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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