KEGG   Trametes versicolor: TRAVEDRAFT_60006
Entry
TRAVEDRAFT_60006  CDS       T04795                                 
Name
(RefSeq) antiviral helicase
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
tvs  Trametes versicolor
Pathway
tvs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tvs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TRAVEDRAFT_60006
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tvs03019]
    TRAVEDRAFT_60006
   03041 Spliceosome [BR:tvs03041]
    TRAVEDRAFT_60006
   03009 Ribosome biogenesis [BR:tvs03009]
    TRAVEDRAFT_60006
   03016 Transfer RNA biogenesis [BR:tvs03016]
    TRAVEDRAFT_60006
Enzymes [BR:tvs01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     TRAVEDRAFT_60006
Messenger RNA biogenesis [BR:tvs03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     TRAVEDRAFT_60006
Spliceosome [BR:tvs03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    TRAVEDRAFT_60006
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    TRAVEDRAFT_60006
Ribosome biogenesis [BR:tvs03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    TRAVEDRAFT_60006
Transfer RNA biogenesis [BR:tvs03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    TRAVEDRAFT_60006
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C ResIII nSTAND3 AAA_22
Other DBs
NCBI-GeneID: 19418131
NCBI-ProteinID: XP_008041464
JGI: 60006
Position
Unknown
AA seq 1063 aa
MDSSDLFSFLDDSAQQKQPSQDANGDVHMETESQAKSTARKRKAITPPQRKESDPIAEGS
SNAAASPKSVVVDEVEIEAKREVAASAGLTGAVDAGSRLELRHQVRHQVAVPPGYPYVPI
ANHVPPEKPAREYKFVLDPFQQVSVYAIQRNESVLVSAHTSAGKTVVAEYAIAQCLLQKQ
RVIYTSPIKALSNQKYREMLAEFGDVGLMTGDVTINPSATCLVMTTEILRSMLYRGSEIM
REVAWVIFDEVHYMRDKERGVVWEETIILLPHSVRYVFLSATIPNAMQFAEWICKSHEQP
CHIVYTDFRPTPLQHYLFPAGGEGIYLVVNEKGEFREDNFTKAMGMLQDTMGDDPADPKA
GKGRKGKTKKGTEKKGSSDIQKIIKMIMLKNYNPVIVFAFSKRECEALALTLSKLEFNST
DEQDLVANIFNNAIENLAPDDRQLPQIANLLPLLKRGIGIHHGGLLPILKEVIEILFQEG
LIKVLFATETFSIGLNMPAKTVVFTAARKFDGRDFRNLSSGEYIQMSGRAGRRGLDDRGV
VIMMCDEKLEPVAAKEMIKGEADRLDSAFHLGYNMVLNLMKVEGISPEFMLERCFYQFQS
NAEVPVIEGELRKEEELKDAIVVPDEELVASYYDFRQQLDQMAADFREVITHPNYSLPFL
QPGRLVKVKHQKLDFGWGVIVNYQKRLPPKNRPGPKPEDVPAHEQYIVDVLLYCTKGSTL
PKDRNVTTPTPGGIQPCLAGRGGEPLVVPVTLSTIDSISRLRIFMPKDLRPLQQRETTWK
AVLEVQSRFPTGIPLLDPIADMKITDAKFKELVQKIDTMEKKMFSSTLHSDPRLPELYTL
YARKQEHQARIRELRKRVQATEDVLQMEELKCRKRVLRRLGFTNASDIVDMKGRVACEIS
TGDELLLTELIFNGVFNTLTPEQCAGLLSCFVFTEKSEQVTKLKEELAAPLRVMQEIARR
IAKVSKESKLPVNEDEYVQSFKVELMDAVVQWCRGASFSDICKLTDQFEGSLIRVFRRLQ
ELIRQMAQAAKVIGNNELQEKFEKASEMLERPNSVIFCSSLYL
NT seq 3192 nt   +upstreamnt  +downstreamnt
atggactccagcgaccttttctcgttcctggacgacagtgcgcaacagaaacagccatca
caagacgctaatggcgacgttcatatggaaaccgagtcccaggcgaagagcacggcgagg
aaacgcaaggctatcacccctccgcaacggaaggaaagcgaccccatagcagaaggttcc
agcaacgccgcagcctccccaaaatcggttgttgtcgacgaagtcgagattgaggccaaa
cgggaggttgcggctagtgctggattgacaggtgccgtcgatgcaggatcccgtctggag
cttcggcatcaggtacgacaccaagttgccgttcccccagggtacccctacgtacctatc
gccaaccatgtgcccccagaaaaaccggcccgcgaatacaagttcgttctcgacccgttc
cagcaagtgtcggtgtacgctatccagcgaaatgagagcgtgctcgtctccgcacatacg
agtgcaggaaagacggtagtagcagagtatgccattgcgcagtgcctgctacagaagcag
cgagtaatctacacaagtccgatcaaggctctgagcaatcagaagtaccgtgagatgctt
gccgagttcggggacgtgggcttgatgaccggagacgtcacaatcaacccgagcgcaaca
tgtctggtcatgacgactgagattttgcggtcaatgctttaccgcggttccgagatcatg
cgcgaagtcgcgtgggtcatcttcgatgaggtccactacatgcgcgacaaggaacgaggt
gtcgtttgggaagagaccataatcctgctaccacacagcgtgcgctatgtcttcctgtcc
gccaccatccccaacgcgatgcagtttgcagagtggatatgcaagtcccatgaacaaccc
tgccacatcgtctacaccgacttccggcccacgccactacaacattatctcttcccagct
gggggtgaaggtatctacctcgttgtcaacgagaagggcgagttccgggaagacaacttc
acgaaggcgatgggcatgctgcaagatacgatgggcgacgaccccgcggatccgaaagca
ggcaagggaaggaagggcaagacaaagaagggcaccgagaagaagggctcgtcggacatc
cagaaaatcatcaagatgatcatgctgaagaactacaaccccgttatcgttttcgcgttc
agcaaacgcgagtgcgaagcgctcgcgcttacgctgtctaagctagagttcaactcaacg
gatgaacaggacctcgtcgcgaacatcttcaacaacgcgattgagaaccttgccccggac
gaccggcagctaccccaaatcgcgaacctcctcccgctcctcaagcgcggcatcggcatc
catcacggcgggttgctcccgattctcaaggaggtcatcgagatccttttccaggagggg
ctcatcaaggtcctgttcgcgaccgagactttctcgatcgggctgaacatgcccgcgaag
acggttgtgttcaccgcggcgcgcaaattcgacggccgcgacttccgcaacctctcgtcc
ggcgagtacatccagatgtccggccgtgcgggccgtcgcgggctcgacgaccgcggtgtc
gtgatcatgatgtgcgacgagaagctagagcctgtggcggcgaaggagatgatcaagggc
gaggcggaccggctcgactccgcgttccatctcgggtacaacatggtgctcaacttgatg
aaggtcgagggcatcagtccggagttcatgctcgagcggtgtttctaccagttccagagc
aacgccgaggttcccgtcatcgagggcgagctccggaaggaggaggagctgaaagacgcg
attgttgtaccggacgaggagcttgtcgcgagctattacgacttccggcagcagctcgac
cagatggctgcggacttcagagaggtcatcacgcaccctaactacagcttgcccttcctc
cagcccggacgtctcgtcaaggtcaagcatcaaaagctcgactttggctggggcgtcatc
gtcaactaccaaaagcggttaccgcccaagaaccgccccgggccgaaacctgaggacgtg
cccgcccatgaacaatacatcgtcgatgtgctgctctactgtacaaaaggctcgacactg
cccaaggaccgtaacgttaccacacccacccctggcggcatccagccatgtttggcagga
cgtggtggcgagccgctcgtcgttcccgtcacgctctccacgattgactccatcagtcgg
ttgcgtatattcatgccgaaggatctccgaccgctccagcagcgagagactacatggaag
gccgtcttagaggtgcagagcaggttccccacgggtatcccactcctggaccctattgcc
gacatgaaaatcaccgatgcgaagttcaaggaacttgtccagaaaatcgatactatggag
aagaagatgttctcgagcacgcttcacagcgacccgcgcctaccagagctctacacactg
tacgcacggaaacaggaacaccaggcgcgcatccgcgagctgcggaaacgcgtgcaagcg
acggaagatgtgctgcagatggaggagctcaagtgccgcaagcgcgtcctccgccgccta
gggttcacgaacgcgtcggacatcgtcgacatgaaaggtcgcgtggcttgcgagatcagc
acgggcgacgagctactgctcacggagctcatcttcaacggtgtcttcaacacgctcact
ccggagcagtgcgcgggtctgctcagctgtttcgtcttcacagagaagagcgagcaggtg
acaaagctcaaggaggaactcgcggcaccgctgcgtgtcatgcaggaaatcgcgcgacgc
atcgcaaaggtctcgaaggagtccaagctacctgtcaacgaggacgagtacgtgcagtcc
ttcaaggtcgagcttatggacgctgtcgtccagtggtgccgaggggcatcgttctcggat
atctgcaagctcaccgaccagttcgaaggcagcctcatccgtgtgttccggcgcctgcag
gagctcatccgccagatggcgcaggccgcaaaggtcatcggcaacaacgagctgcaggag
aagttcgagaaggcgtcggaaatgctggagcggccaaactcggtcatcttctgctcgtca
ctgtacctgtag

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (38)   

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