KEGG   Tropheryma whipplei Twist: TWT_696
Entry
TWT_696           CDS       T00116                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
twh  Tropheryma whipplei Twist
Brite
KEGG Orthology (KO) [BR:twh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:twh03032]
    TWT_696 (topA)
   03400 DNA repair and recombination proteins [BR:twh03400]
    TWT_696 (topA)
Enzymes [BR:twh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     TWT_696 (topA)
DNA replication proteins [BR:twh03032]
 Prokaryotic type
  DNA Topoisomerases
   TWT_696 (topA)
DNA repair and recombination proteins [BR:twh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      TWT_696 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim Toprim_4
Other DBs
NCBI-ProteinID: AAO44793
UniProt: Q83FM2
Position
complement(809819..812344)
AA seq 841 aa
MKKLVIVESPTKVSSVGRYLGDGYVVMSSVGHIRDLPAPSGLTPDLKRSAHAQFAVNIEN
DFEPYYVVLENKKKVVEELQSALNNSDELLIATDGDREGEAIAWHLVQVLKPTVPVRRLV
FHEITREAIAYALQHPRPIDENLVDAQEARRILDRLYGYELSPVLWKKVRPGLSAGRVQS
PATRLLVDRERERINFKSAEYQAVTADFQVDSDVFSASLTLFGERKIATGRDFDNLANLK
TDALVLDKNLTDRILEELKSKGALDVEAIDSKPYSRNPYAPFITSTLQQDAAHKLGFSAK
RTMRTAQQLYEKGFITYMRTDSPRLSLQAISAARAQVELLYGREFLPDSPRTYGAKAKNA
QEAHEAIRPTGEVFERPESIESVLSVDCMRLYDLIWRRTIASQMVSARGETVTLTLSARI
PERSIFVLSGTVLHEKGFLKVYEGLQDLNSKLLPNLQVGDQVTLVDVRAVGHTTLPPPRY
TEASLVKVLEELGLGRPSTYALILSTIQERGYAHLRNRMLVPDWLAFSVVNLLENFFSRL
IDYDFTANLEDQLDEIALGSQNRSDWLRKFYFGDDNLPGLKEIISGAKDIDARAINSIPM
VGATLRVGRYGPYLEVGDKRFSIPHDVYPDALTPEKIHELVNQPESPVRELGAHPETGKL
VVLKSGRFGPYIEEVSDEKNVRRSSLFKNMDPEEVNLDVAVKLLEIPRVIGVNQENGEKV
IACNGRFGPYIKCGKETRPLDSEDDILSVTLDEALAILSAPKVRRSRVLMEFPTDDPVTR
RAVQIKSGRFGPYVTDGVTNATLDNTSWEDVTFDEAVSLLAEKRQRVDGDLDQETAEKIH
V
NT seq 2526 nt   +upstreamnt  +downstreamnt
atgaaaaaacttgttatagtcgagtcgccaaccaaggtatcgtcggttggtcgttacctt
ggtgacggttatgttgtcatgtcgtcagtagggcatattcgtgatttgcccgcccctagt
gggcttaccccagatcttaagaggtccgctcatgcccagtttgcagttaatattgaaaac
gattttgagccctactatgtcgtcctggagaataaaaagaaggtagttgaggagctacag
tcggccctgaataattcggacgagctccttatagcgacagacggtgatcgggaaggtgag
gcgatagcgtggcatttggtccaggttctgaagcctactgtgccggtgaggcgattggta
tttcacgagattactagggaagccatcgcgtatgcactacaacatccgaggccgattgat
gaaaaccttgttgacgcgcaggaggctcggagaattctggacagactctatggttacgag
ctatccccggtgctctggaaaaaggtaaggcccgggttgtctgccggtagagttcagtct
cccgctacccgacttctggtggatcgtgagcgtgaacggatcaacttcaagtcggctgaa
tatcaagcggtaacggctgactttcaggtggattccgacgtattctcagcttctttgacg
cttttcggtgagaggaaaatcgccaccgggcgtgactttgacaatttggcaaatctcaaa
acagatgctttagtactagataaaaatctaaccgatcgcatactcgaagagctcaaaagt
aagggtgctttggatgttgaagcaatcgattcaaagccgtatagcagaaacccttatgct
ccgtttatcacttccaccctgcagcaggatgccgcacataaactggggttctcagctaaa
cgaacaatgcgcactgcccaacaattgtatgaaaaagggtttatcacgtacatgagaacg
gactcaccacgtctgtctctacaagcgatttccgccgcgagagctcaggttgagcttctc
tacggaagggagtttctaccggattccccaagaacctacggggcaaaggcaaagaacgcc
caagaagcgcatgaggcgataaggcctactggcgaggtgtttgaaaggcctgagtcgata
gaatctgttttatcggttgactgcatgaggctttacgaccttatatggaggcgaacgatt
gcttcccagatggtatctgctaggggtgaaactgtcaccctgaccctctctgccagaatt
ccggagcgatctatttttgtcctgtccggaactgttctgcatgaaaagggtttcttgaaa
gtgtatgaagggttgcaggatctcaactctaagctattaccaaatttacaggtcggcgat
caggttacccttgttgatgttcgtgcggtcgggcacacaacccttccgcccccacgatac
accgaggctagcctggtaaaggtcctagaggagttggggctgggtcgcccatcaacatat
gcgcttattttgagcacaattcaggagcgcggctatgctcatctcaggaacaggatgctt
gttcctgattggcttgctttctctgttgtcaatcttcttgagaacttcttctctcgacta
attgattacgattttactgcgaacctcgaggatcagcttgatgagatcgcactcggctca
cagaatagatcggactggcttcgtaagttttactttggtgatgacaatcttcctggattg
aaggagataatttcaggcgcaaaagacatagatgcacgagcaatcaattcgatcccaatg
gtcggggcgactcttcgggtagggagatatggcccgtatcttgaagttggggataagaga
ttcagcattccgcatgatgtataccccgatgccttgactcccgaaaaaatacatgagctg
gttaatcagccagaatccccggtaagagaactcggcgctcacccggagaccggaaaatta
gttgtcttaaagtccggtcgctttggcccatatatcgaggaagtttcggatgagaaaaat
gtcagacgatcaagtctgttcaagaacatggatccagaggaagttaacttagatgtggct
gttaagctgctggaaatacccagagtcattggggtcaaccaagagaacggagaaaaggtt
attgcttgtaacggtcgctttgggccatatataaaatgtggtaaggagacacgtccccta
gacagtgaagatgacattctctcggtgacgcttgacgaggcattagccatcctgtccgca
ccgaaagttaggcggtcacgtgttcttatggaatttccaacggatgatccggtcacaagg
cgcgcagtgcaaatcaagtccggtcgctttgggccatatgtaacagatggcgttacaaat
gcaactttggacaatacatcgtgggaggatgtgacgtttgacgaagctgtgtccctgctc
gcggaaaagcgtcaacgggttgatggtgatcttgatcaagaaactgcagaaaagatccat
gtgtag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (32)   

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