KEGG   Thermoanaerobacterium xylanolyticum: Thexy_0731
Entry
Thexy_0731        CDS       T01505                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
txy  Thermoanaerobacterium xylanolyticum
Pathway
txy03030  DNA replication
txy03410  Base excision repair
txy03420  Nucleotide excision repair
txy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:txy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Thexy_0731
   03410 Base excision repair
    Thexy_0731
   03420 Nucleotide excision repair
    Thexy_0731
   03430 Mismatch repair
    Thexy_0731
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:txy03032]
    Thexy_0731
   03400 DNA repair and recombination proteins [BR:txy03400]
    Thexy_0731
Enzymes [BR:txy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Thexy_0731
DNA replication proteins [BR:txy03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Thexy_0731
DNA repair and recombination proteins [BR:txy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Thexy_0731
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Thexy_0731
   MMR (mismatch excision repair)
    DNA ligase
     Thexy_0731
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Thexy_0731
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 HHH_8 RNA_ligase HHH_3 RNA_pol_A_CTD zf-NADH-PPase
Other DBs
NCBI-ProteinID: AEF16778
UniProt: F6BIN4
Position
772178..774157
AA seq 659 aa
MAIEDRIKELRDKLNHHSYMYYVLDKPEISDYEYDMMMRELIELEEKYPQFKTPDSPTQR
VGGEPLKEFEPFTHVVPMQSLANAFSEGELRDFDRRVRASVGDVEYVVEFKIDGLSVELI
YENGFFTVGSTRGDGIIGENVTNNLKTIKSIPLRLKDDLNLIVRGEVFMPKASFEKLNEE
RELNGESLFANPRNAAAGSLRQLNPKITAKRDLDIFVFNLQRIDGIELKTHAEALEFLKY
QGFKVSPHIKVCGNIDEVIEDINYIRDIRDSLSYETDGAVVKVNDLEKREILGSTAKDPR
WAIAFKYPTERQKTKVKDIVVQVGRTGALTPTAILEPVKIAGSIVSRATLHNEDYIKEKD
IRIGDTVIIQKAGEIIPEVVSVVAEERDGSEKFFIMPEVCPECGAATVRLPGESVTKCTG
LNCPAKLKRGIIHFASKDAMDIDGLGPAVIGQLLDNHLIHNISDLYYLKYDDLVKLDRMG
DKSAKNLINAIEESKGRDLDRLIFGLGIDLIGSKAAGILASHFKTMESLEKATFEELTEI
EEIGPKMADSVVAFFKEKQNLDIIDRLKAAGVNMRKKDAINVNDNFKGLTFVLTGTLEKY
TRDEAKRLIEERGGKVTGSVSKKTDYVVVGADPGSKLSKAQELGVKILNEEQFENMLKQ
NT seq 1980 nt   +upstreamnt  +downstreamnt
atggcgatagaagacaggataaaagaattgagagataagcttaatcatcacagctacatg
tactatgtactggacaagcctgaaatatctgactatgagtatgatatgatgatgagagag
ctcattgagttagaagaaaagtaccctcagtttaagacgcctgattcaccgactcaaagg
gttggcggtgaacctttgaaagagtttgaaccatttacacatgtagtgccgatgcaaagt
ttggcaaatgctttttctgaaggcgagcttagagattttgacaggagagtaagagcatct
gtcggtgatgtagaatacgtagtagagtttaaaattgacggtttatctgtggagcttata
tatgaaaatggcttttttaccgtcggctccacgagaggtgacggaattataggtgaaaat
gtgacaaacaatctaaaaaccattaaatcaattcctttaagacttaaagatgatttaaat
ctcatcgtaagaggtgaggtttttatgcctaaggcttcatttgaaaagttaaacgaagaa
agagaattaaacggagaaagcctttttgcaaatccgagaaatgctgctgctggatcactt
aggcaattaaatcctaaaatcacggctaaaagagatctggatattttcgtatttaattta
cagagaatagatggaatagaattaaaaacacatgctgaagcattagaatttttaaaatat
caaggatttaaagtaagtccgcatattaaagtatgtggaaatatagacgaagtcattgaa
gacataaattatataagagacataagggatagtttgtcttatgaaacagatggagcagtt
gtcaaggtaaatgatttagaaaaaagggaaattttggggtctactgcaaaggatcctcgt
tgggcaattgcattcaaatatccaacagaaaggcaaaaaacgaaagtcaaagatatagta
gttcaggttggaaggactggtgcactgacaccaactgccatattagagcctgtgaaaatt
gcaggttccatcgtatcaagagcgacgcttcacaatgaagattacataaaagagaaggat
ataagaattggtgatacggtgataatccaaaaagctggcgaaatcatacctgaagttgta
agtgttgtagcagaagaaagagatggcagcgagaagttttttatcatgccagaagtgtgt
cccgaatgcggtgctgcaacggtgaggcttcccggtgaatctgtgactaagtgcacaggt
ctaaattgtcctgctaagttaaaaagaggcataatacactttgcatctaaagatgctatg
gacatagatggattaggaccagcggtaataggacagcttcttgacaaccatcttatacac
aacatatcagatctgtattatttgaagtacgatgatttggtaaaacttgataggatggga
gataaatcagcaaagaatctcatcaatgctatagaagaaagcaaaggcagagatttagac
agattgatttttgggcttggcattgatctcattggaagcaaagctgccggcattttagcc
agtcatttcaagacgatggaatctcttgagaaagctacttttgaggagcttactgaaata
gaggaaattggccctaagatggcagacagtgtggtggccttttttaaggaaaaacaaaat
ctggatataatagatagattaaaagctgctggtgtaaatatgcgcaagaaggatgcaata
aatgttaatgacaattttaaaggacttacttttgtcttaacaggaacacttgaaaagtat
accagagatgaggctaagaggcttatagaagaaagaggaggaaaagtgacaggttctgtt
agcaaaaaaacagattatgtcgtcgtaggtgcagatccaggttcaaagctttcaaaagca
caagagcttggagtaaagattttaaatgaagaacagtttgaaaacatgctgaaacaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (34)   

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