KEGG   Thiosulfativibrio zosterae: THMIRHAT_04490
Entry
THMIRHAT_04490    CDS       T06856                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
tzo  Thiosulfativibrio zosterae
Pathway
tzo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tzo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    THMIRHAT_04490 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tzo03021]
    THMIRHAT_04490 (rpoC)
   03400 DNA repair and recombination proteins [BR:tzo03400]
    THMIRHAT_04490 (rpoC)
Enzymes [BR:tzo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     THMIRHAT_04490 (rpoC)
Transcription machinery [BR:tzo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     THMIRHAT_04490 (rpoC)
DNA repair and recombination proteins [BR:tzo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      THMIRHAT_04490 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C Peptidase_M23 DCB
Other DBs
NCBI-ProteinID: BBP42703
UniProt: A0A6F8PKR9
Position
567624..571826
AA seq 1400 aa
MKDLLGFLKQQNASSDFDAIKVSLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIRDYECLCGKYKRLKHRGVICEKCGVEVTQSKVRRERMGHIDLATSVAHIWFLKSL
PSRIGLMLDMTLKEIEAVLYFEAFMVVDPGLTPLEPWQLLSEEEYLDALDEYGDEFEAQM
GAEAIKKMLQSIDLKSEEVRLKEEMDTTNSETKQKKLSKRLKLVDSFLQSGNRPEWMVLD
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLMAPDIIVRNEKRMLQ
ESVDSLLDNGRRGRAVTGTNKRQLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFSKLQKRGLASTIKAAKKMVDQGLPEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAINLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEA
RTLMMSTNNLLSPANGDPIIVPSQDVVLGLYYITRQSINEVGEGKAFSNWQEVQRALDAK
VVHLHTMIKLKLEQTIVDEAGVESVTRGIIDTTAGRALLLRILPKGLSFDLVNKDLTKKS
ISQALNACYRLLGPKETVIFADQLMYTGFKWSTLAGLSFCSDDMLIPDEKAGIIARAEEQ
VAEIQGQFSQGLVTEGERYNKVVDIWSHTNELVTKSMMDELQFETVIDAKGNEVKQTSFN
SVYMMADSGARGSVAQMRQLGGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTENDCGTSAGITVSSHVEGGDVVEELKDRIL
GRVLADDVVGLDGSVIVASGTLLDERLVAIIDKSGVDSVKVRSTITCETKFGICQRCYGR
DLARGHLVNLGEAVGVMAAQSIGEPGTQLTMRTFHIGGTASASAAQSQVEVRHEGKVKFD
NLKTIANSEDRLIVTSRSGEVSILDELGREKERYKIPYGAVLKVKDGIMVQSGEVLAAWD
PHTHPIITETKGRVEFGNFEGIVEEHTDELTGLTTHVVKSARDRSAVNKETRPYIQLVDA
AGEVVPFPGTQTPAMYYLPENAIVVVQSNDDIHPGDIIARIPQASSKTKDITGGLPRVAD
LFEARMPKEPAIMAEVAGVVGLGKETKGKQRLIITQDSGEQYELLIPKWRSLDVFEGERV
EKGDIVVEGNPNPHDILRLLGVEKLTEYVVSEVQDVYRLQGVKINDKHIETIVRQMLRKV
EVKTSGDTNLIKGEQAEYARVLEFNELARSKGEVEATYQRVLLGITKASLATESFISAAS
FQETTRVLTEAAVSGKRDQLVGLKENVIVGRLIPAGTGYAYHKARKAASEQTQIELKSFI
AAQDTTTEEVVEVMEETTEL
NT seq 4203 nt   +upstreamnt  +downstreamnt
atgaaagatttattaggattcctaaaacaacaaaacgcttcaagtgattttgatgcaatc
aaagtctctcttgcttccccagaaaagattcgttcttggtcgtttggtgaggttaagaag
ccagaaaccattaactatcgtaccttcaagcctgagcgtgatggtttattttgtgccaaa
attttcggacctatccgtgattatgagtgcttgtgtggtaaatacaagcgtttaaaacac
cgtggtgttatttgtgagaaatgtggcgttgaagtaactcaatctaaagtgcgtcgtgag
cgcatgggtcacatagatcttgcgacttcagtggcacatatttggtttttaaaatcattg
ccctctcgtattggtttaatgttggatatgacgttaaaagaaatcgaagcggtactttat
tttgaagctttcatggttgttgaccccggtttaacacctttagagccttggcagttattg
tctgaagaagagtatttagatgctttagatgaatatggcgacgaatttgaggcgcaaatg
ggtgctgaagccattaagaaaatgcttcaatcgattgatttaaaatctgaagaagttcgc
ttgaaagaagagatggatacaaccaactctgaaactaagcaaaagaaactttcaaaacgc
ttaaagttagtggattctttcttgcagtcaggcaaccgtccagaatggatggtattagat
gtattgccagtattgccacctgaattacgccctttagttccacttgatggtggtcgtttt
gcaacgtctgacttaaacgatttgtaccgccgtgtgattaaccgtaacaaccgtttgaag
cgtttattggatttgatggcgccagatattattgtgcgtaacgaaaagcgtatgctgcaa
gagtcggttgattcattattggataatggtcgtcgtggtcgcgcagtaacaggtactaac
aagcgtcagttaaagtctttggcagatatgatcaaaggtaagcagggtcgtttccgtcaa
aacctgttaggtaagcgtgttgactattctggtcgttcggtaatcgtggtaggtcctact
ttgcgcctgcatcagtgtggtttaccgaaaaaaatggctttagagttattcaagcctttt
attttcagtaaattgcaaaagcgtggtttagcatcaacgattaaagctgccaagaaaatg
gtagaccaagggttgccagaggtttgggatgtacttgatgaagtcattcgtgaacatcca
gtactattaaaccgtgcaccgacactccacagattaggtattcaagcatttgaacctgtg
ttaattgaaggtaaagcaattaatttacatccgttagtttgttcggcatttaacgctgac
ttcgatggtgaccaaatggcggttcacgttcctctatcgttagaggcacaattagaagcg
cgtactttgatgatgtctaccaataacttgttatcacctgcaaacggtgacccaattatt
gtgccttctcaggacgttgttcttgggctttattacatcactcgtcaaagcattaacgaa
gttggcgaaggtaaggctttctctaactggcaggaagttcagcgtgcattggatgccaaa
gttgtccatttgcacacgatgatcaaacttaagttagagcaaacaattgttgatgaagcg
ggtgttgaaagtgttactcgtggaatcattgatacaacggctggtcgtgcgctattgtta
agaattttgcctaaaggtttgtcttttgatttggttaacaaagatttaacgaaaaaaagc
attagtcaggcattaaatgcttgttatcgtttgttaggtcctaaagaaacggtaatcttt
gctgaccaattgatgtataccggttttaaatggtctactttagcagggctttcattctgt
tcagatgacatgttaattcctgatgaaaaagcaggcatcattgctcgtgcagaagagcag
gttgctgaaattcaaggacagttttcacaaggtttagtaaccgagggtgagcgttataac
aaagtcgttgatatttggtctcatacgaatgaattggttaccaagtccatgatggacgag
ttgcagtttgaaactgttattgatgctaagggtaatgaagttaagcaaacatcatttaac
tctgtttacatgatggcggattctggtgcgcgtggtagcgttgcacagatgcgtcagtta
ggtggtatgcgtgggttgatggctaagccagatggatctatcattgaaacaccgatcact
gcaaacttccgtgaaggtctaaacgtacttcagtactttatctctacacacggtgcgcgt
aaaggtttggcagatactgcattgaaaacagcaaactctggttacttaacgcgccgttta
gttgatgttgcgcaagatgttgttgtgacagaaaatgattgcggaacctctgcgggtatt
actgtatcttcacatgttgaaggtggtgatgttgttgaggagctaaaagatcgtattcta
ggtcgtgtactggcagatgatgtggttggcttagatgggtcagtcattgtcgcctcgggg
actttattagatgagcgcttagttgcaatcattgataagagcggtgtggatagcgtcaaa
gtccgttcaaccattacttgcgaaacaaagtttggtatttgtcagcgttgttatggtcgt
gatttagcgcgtggtcatttggttaacctgggtgaagcagtcggtgttatggctgctcag
tcaatcggtgagccaggaactcagttaacgatgcgtacattccatatcggtggtacagca
tccgcatctgcagctcaaagccaagttgaagtgcgtcatgaaggtaaagttaagtttgat
aacctaaaaacaatcgccaactctgaagatcgtttaattgtgacttctcgctcgggtgaa
gtttcaattttagatgaacttggccgtgaaaaagagcgttataaaattccttacggtgct
gtgctaaaagttaaagacggcattatggttcagtcaggtgaagttctggctgcatgggat
cctcatacgcatccaatcattactgagactaaaggtcgtgttgaatttggtaactttgaa
gggattgtagaagagcataccgatgaattaacaggcttaacaacccatgttgttaagagt
gctagagatcgttcagcagtcaataaagaaacgcgtccatacatacagttagtggatgct
gcgggtgaagttgtacctttcccaggaacgcaaacaccagcgatgtattatttacctgaa
aatgcaattgttgttgtacaaagtaatgatgatattcacccaggtgacattattgctcgt
attcctcaagcgtcttcaaagacaaaagatattaccgggggtcttcctcgcgtagctgat
ttgtttgaagcgcgtatgcctaaagaacctgcaatcatggcagaagtagctggtgttgtc
ggtttaggaaaagaaacaaaaggcaagcaaagattgatcattacccaagacagtggtgaa
caatatgaattgctaattcctaaatggcgttcattggatgtctttgaaggtgagcgtgtt
gagaagggggatattgttgttgaaggtaatccaaatccgcatgacattttaagactgtta
ggtgttgaaaaactgacggaatatgttgtgagtgaagtacaagatgtttatcgcttacaa
ggtgtaaaaattaacgacaagcatatcgaaacgattgtgcgtcagatgttaagaaaggtt
gaggttaaaacttcaggagatactaacttaatcaaaggtgagcaagcagaatatgcaaga
gttcttgagtttaatgaacttgctcgcagtaaaggtgaagttgaagcgacttatcagcgc
gtacttctagggattactaaagcgtctttggcaactgagtcatttatttcagcggcgtct
ttccaagaaacaactcgtgttttaacagaggctgcggtcagtggtaagcgcgatcagtta
gttggtttaaaagaaaacgttattgtaggtcgcttaattccagccggaacaggttatgcc
tatcataaagcgcgtaaagcagcgagtgagcagactcaaattgaattgaagtcttttatt
gctgctcaagatactacaactgaagaagttgtagaagttatggaagagacaacagagtta
taa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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