KEGG   Ustilago maydis: UMAG_01249
Entry
UMAG_01249        CDS       T01021                                 
Name
(RefSeq) putative U6 snRNA-associated Sm-like protein
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
uma  Ustilago maydis
Pathway
uma03018  RNA degradation
uma03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:uma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    UMAG_01249
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UMAG_01249
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:uma03019]
    UMAG_01249
   03041 Spliceosome [BR:uma03041]
    UMAG_01249
Messenger RNA biogenesis [BR:uma03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     UMAG_01249
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     UMAG_01249
Spliceosome [BR:uma03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    UMAG_01249
 Complex C
  U2 snRNP components
    UMAG_01249
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 23562337
NCBI-ProteinID: XP_011387181
UniProt: A0A0D1CYC3
Position
2:1334644..1335384
AA seq 110 aa
MAQVERSSPAAAASTGPSPLGSVTEPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMN
LILGDVEETIYVVDVNDESGSETVRVVKRQSEMLFVRGDSVILVSPPSST
NT seq 333 nt   +upstreamnt  +downstreamnt
atggcgcaagtcgaacgatcatccccagcggcggccgccagtacgggaccatcacccctc
ggctcggtaacagaaccattcgatcttatccgtctgtccatttcagaacgtgtctacgtc
aagttgaggggcgaccgtgaactgcgtggcacattgcatgcatacgatggacacatgaac
ttgatcctgggtgatgtggaggagaccatctacgttgttgatgtcaacgacgaaagtggg
tctgagactgttcgagtggttaaacgtcaaagcgaaatgctctttgtccgtggagatagc
gtcattctcgtctcgcctccttccagcacctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (24)   

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