KEGG   Ursus maritimus (polar bear): 103669880
Entry
103669880         CDS       T03271                                 
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
  KO
K13126  polyadenylate-binding protein
Organism
umr  Ursus maritimus (polar bear)
Pathway
umr03015  mRNA surveillance pathway
umr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:umr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103669880 (PABPC1L)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103669880 (PABPC1L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:umr03019]
    103669880 (PABPC1L)
   03041 Spliceosome [BR:umr03041]
    103669880 (PABPC1L)
Messenger RNA biogenesis [BR:umr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     103669880 (PABPC1L)
   mRNA cycle factors
    Stress granule specific factors
     103669880 (PABPC1L)
Spliceosome [BR:umr03041]
 Complex C
  Other components
   Complex C specific factors
    103669880 (PABPC1L)
SSDB
Motif
Pfam: RRM_1 RRM_5 MARF1_RRM1
Other DBs
NCBI-GeneID: 103669880
NCBI-ProteinID: XP_040494317
UniProt: A0A8M1GHT6
Position
Unknown
AA seq 649 aa
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFS
TFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAIATMNGMLLNDRKVFVGHFKSRRERE
AELGARAVEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEK
HEEAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKN
LDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFLPAVPQPPAQAAY
YASGPSVQPAPRWTAQPPRVSSTYPPAASMVRPPAMLRRPPAQVSSVRQASTQVPPPGPH
TQRVANIGTQTTGASGVAYSTPTGPVLTHKYSSATHNPGVQEPAVRIPGQEPLTASMLAA
APLHEQKQMIGGRGSGSAAGTSGHGADGREHALKPENGIPTASADKRMAFPALGSLSLGT
VTSFPMGLRLYLSSVCGRKASHPASLSPVALCIKSAANSVLSPMRPSCV
NT seq 1950 nt   +upstreamnt  +downstreamnt
atgaacgccagcggcccgggctacccgctcgcctcgctctacgtgggcgacctgcacccc
gacgtgaccgaggccatgctgtacgagaagttctcgcccgccggccccatcctgtccatc
cgcgtgtgccgcgacgtggccacccgccgctcgctgggctacgcctacatcaacttccag
cagccggccgacgcggagcgggcgctggacacgatgaactttgaagtgatcaaaggccag
cctgtccgcatcatgtggtcccagcgagacccaggactccgcaagtcgggtgtgggcaac
atcttcatcaagaacctggaggactccattgacaacaaggccttatatgataccttctcc
acctttgggaacatcttgtcttgcaaggtggtgtgtgacgatcatgggtcccggggcttc
ggctttgtccactttgagacccacgaggctgcgcagcaggccattgccaccatgaacggg
atgctgctgaatgaccgcaaagtcttcgtgggccacttcaagtcccgacgggagcgggaa
gcagagctgggagctcgggccgtggagttcaccaacatttatgtgaagaacctccatgtg
gatgtggacgagcagggcctgcaggacctcttctcccagtttgggaaaatgctgagtgtg
aaggtgatgagggacgacatcggccactcccgaggcttcggctttgtcaactttgagaag
cacgaagaagcccagaaggctgtgacggacatgaatggcaaggaggtgagcgggcggctg
ctgtacgtgggccgggcccagaagcgggtggaacggcagaacgagctgaagcgtaggttc
gagcagatgaagcaggaccgggcgacccgttaccagggtgtgaacctgtacgttaagaac
ctggatgactccatcgatgatgagaagctgagaaaagagttctctccctatggcgtgatt
accagcgctaaggtgatgacagagggtggccacagcaaggggtttggctttgtgtgtttt
tcctccccagaagaggcgacgaaggccgtgaccgagatgaacgggcgcatcgtgggcacc
aagccgctgtacgtggcactggcccagcgcaaagaggagcggaaggccatcctgaccaac
cagtacatgcagcgtctctccacggtgcgggctctgggcggccccctcttgggctccttc
cagcagcccgccagctacttcctgcccgccgtgccccagcctccagcccaggctgcgtac
tatgcctccggcccctccgtgcagcccgcccccaggtggacggcccagcctccgagagtc
tcctccacctaccctccagctgcctcaatggtccggccaccagccatgttgcggcgcccc
ccggcccaggtcagcagtgtcaggcaggcctctacccaggtgccacccccggggccccac
acccaaagagtggccaacattggtacccagaccacaggagccagcggggtggcatattct
acccctaccgggcctgtcctgacacacaaatattcctcagcaacacacaaccctggggtg
caggagccggctgtgcgcatcccgggacaggagcccctgacggcgtccatgctggccgcg
gccccactgcacgagcaaaagcagatgattggtggaagaggctctggcagtgctgcaggc
acatcaggccacggagctgacggccgtgaacatgctctgaaaccagaaaatggaatcccc
accgcctcggctgacaagaggatggcgtttcctgctcttggctctctgtccctgggaacc
gtaacttctttccccatggggctgcgtctgtacctgagctctgtatgtggaaggaaggcg
agtcaccccgccagcctgtcacctgttgctttgtgcattaaaagtgctgcaaactctgtc
ctgtctcccatgaggccttcttgtgtctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (10)   
   RefSeq(nuc) (8)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (29)   

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