ID A0A060VZ61_ONCMY Unreviewed; 1065 AA.
AC A0A060VZ61;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 08-NOV-2023, entry version 24.
DE RecName: Full=LsmAD domain-containing protein {ECO:0000259|SMART:SM01272};
GN ORFNames=GSONMT00081174001 {ECO:0000313|EMBL:CDQ60147.1};
OS Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes;
OC Salmonidae; Salmoninae; Oncorhynchus.
OX NCBI_TaxID=8022 {ECO:0000313|EMBL:CDQ60147.1, ECO:0000313|Proteomes:UP000193380};
RN [1] {ECO:0000313|EMBL:CDQ60147.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=24755649; DOI=10.1038/ncomms4657;
RA Berthelot C., Brunet F., Chalopin D., Juanchich A., Bernard M., Noel B.,
RA Bento P., Da Silva C., Labadie K., Alberti A., Aury J.M., Louis A.,
RA Dehais P., Bardou P., Montfort J., Klopp C., Cabau C., Gaspin C.,
RA Thorgaard G.H., Boussaha M., Quillet E., Guyomard R., Galiana D., Bobe J.,
RA Volff J.N., Genet C., Wincker P., Jaillon O., Roest Crollius H.,
RA Guiguen Y.;
RT "The rainbow trout genome provides novel insights into evolution after
RT whole-genome duplication in vertebrates.";
RL Nat. Commun. 5:3657-3657(2014).
RN [2] {ECO:0000313|EMBL:CDQ60147.1}
RP NUCLEOTIDE SEQUENCE.
RA Genoscope - CEA;
RL Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the ataxin-2 family.
CC {ECO:0000256|ARBA:ARBA00007503}.
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DR EMBL; FR904341; CDQ60147.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A060VZ61; -.
DR STRING; 8022.A0A060VZ61; -.
DR PaxDb; 8022-A0A060VZ61; -.
DR Proteomes; UP000193380; Unassembled WGS sequence.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR InterPro; IPR009818; Ataxin-2_C.
DR InterPro; IPR045117; ATXN2-like.
DR InterPro; IPR009604; LsmAD_domain.
DR InterPro; IPR025852; SM_dom_ATX.
DR PANTHER; PTHR12854; ATAXIN 2-RELATED; 1.
DR PANTHER; PTHR12854:SF11; ATAXIN-2; 1.
DR Pfam; PF06741; LsmAD; 1.
DR Pfam; PF07145; PAM2; 1.
DR Pfam; PF14438; SM-ATX; 1.
DR SMART; SM01272; LsmAD; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000193380}.
FT DOMAIN 206..274
FT /note="LsmAD"
FT /evidence="ECO:0000259|SMART:SM01272"
FT REGION 256..729
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 881..972
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 256..283
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 298..313
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 329..357
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 358..392
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 393..425
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 450..548
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 581..607
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 634..673
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 676..690
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 709..725
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 881..929
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 937..952
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1065 AA; 115296 MW; 054645DC6B173877 CRC64;
MSMKQAGGNR KPGSGAASVM SHFEDYNNID NYCFHFLSLR GRHSAKGPSA AVVSNGVYAN
MRMVHVLTSL VGTNCELKVK NGMVYDGVFK TYSPECDLVL DAANIKSPGP SVGLRQEDLV
DSIIFKASDV VVVHFRDVDF NYARKDNFTD TAVGGRINGE HKEKDLEPWD GGRQQHMVSG
SLESLDTDVS NGWDPNDMFK YNEEQYGIKS TYDSSLSTYT VALERDNSEE FLKREARAAQ
LAEEIEASST YKSRVALEND ERSEEEKYTA VVRGEREQHT LNREKYIPPG QRNREGISWG
AGRQNSPRLV QSSSGPPRPG LHDYTPSSGA DQRVVNGVSF PELSSCATSC PSPSSRYQSG
PSPLPPRAAT PTRPPSRPPS RPSRPPSHPS AHGSPAPIST IPSRRMSSEG PPRMSPKTQR
TPRTHRVPPG SRVPPGVDFM PHNAPGEVSV PPATRSSSSG GTWSSVVSGA HRPRSPRQNS
MGGASPGPSP QTGSTPVEPV NTSMSASSPT ASPAPNMAAT SSAEAKDSRV QATRQNSPTV
NKENMKPLES PPSINRPLSK GPPSMAPDHR KQIDNLKKFS VDFRLQSSSN PDPQFQQMVT
KPPQDTGEKS KQLPLDKGLE GSEGPVVPAR SNKPDSPGAS SPSLSSTLCP APEQNRGPDV
TSQGVQTSAP NLSGGAKPED KEEDEADQMR KSTLNPNAHE FKPRVFTPQP KPATTPTPPR
PQGQPSPSIV MQQPQQVYFP QMYPLTPVSP GVQSPAMYHV QMPHMTLSQS KPYRPVSNMP
QQRSDQHHPQ GTPTMMHPAA GPPIVAQSPA YSAQYFTCSP QQFTSQQLMP HYQSQAQHVF
SPVIQGQARM MAPPTHGHPG QLVSSTTQYG EQTHTMYVSQ GPMPQQYAHP NTTLHPHPQP
SATPTGQSQQ GVQHGGNHPA PSPVQQHQAA AAAQALHMGN QPQQQMYQAL APTPPSMTPG
PNPQSPQGSF SSAQQAVYLH PQQMQHGYNP SHMAHMQQAH IQSGMVPSHH GNPGHPQMML
MATQQQGGPQ PQLAQNALNP IPVSSTAHFS YLAHPQVQQH HQQQL
//
