ID A0A060WJV7_ONCMY Unreviewed; 824 AA.
AC A0A060WJV7;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 24-JAN-2024, entry version 20.
DE RecName: Full=SSD domain-containing protein {ECO:0000259|PROSITE:PS50156};
GN ORFNames=GSONMT00048562001 {ECO:0000313|EMBL:CDQ67236.1};
OS Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes;
OC Salmonidae; Salmoninae; Oncorhynchus.
OX NCBI_TaxID=8022 {ECO:0000313|EMBL:CDQ67236.1, ECO:0000313|Proteomes:UP000193380};
RN [1] {ECO:0000313|EMBL:CDQ67236.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=24755649; DOI=10.1038/ncomms4657;
RA Berthelot C., Brunet F., Chalopin D., Juanchich A., Bernard M., Noel B.,
RA Bento P., Da Silva C., Labadie K., Alberti A., Aury J.M., Louis A.,
RA Dehais P., Bardou P., Montfort J., Klopp C., Cabau C., Gaspin C.,
RA Thorgaard G.H., Boussaha M., Quillet E., Guyomard R., Galiana D., Bobe J.,
RA Volff J.N., Genet C., Wincker P., Jaillon O., Roest Crollius H.,
RA Guiguen Y.;
RT "The rainbow trout genome provides novel insights into evolution after
RT whole-genome duplication in vertebrates.";
RL Nat. Commun. 5:3657-3657(2014).
RN [2] {ECO:0000313|EMBL:CDQ67236.1}
RP NUCLEOTIDE SEQUENCE.
RA Genoscope - CEA;
RL Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the patched family.
CC {ECO:0000256|ARBA:ARBA00005585}.
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DR EMBL; FR904577; CDQ67236.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A060WJV7; -.
DR PaxDb; 8022-A0A060WJV7; -.
DR Proteomes; UP000193380; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR Gene3D; 1.20.1640.10; Multidrug efflux transporter AcrB transmembrane domain; 2.
DR InterPro; IPR003392; Ptc/Disp.
DR InterPro; IPR000731; SSD.
DR PANTHER; PTHR10796:SF60; PATCHED DOMAIN-CONTAINING PROTEIN 3; 1.
DR PANTHER; PTHR10796; PATCHED-RELATED; 1.
DR Pfam; PF02460; Patched; 1.
DR SUPFAM; SSF82866; Multidrug efflux transporter AcrB transmembrane domain; 2.
DR PROSITE; PS50156; SSD; 1.
PE 3: Inferred from homology;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000193380};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 20..41
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 102..124
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 131..155
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 167..185
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 205..224
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 236..259
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 525..544
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 550..570
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 577..601
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 621..639
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 651..674
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 102..259
FT /note="SSD"
FT /evidence="ECO:0000259|PROSITE:PS50156"
SQ SEQUENCE 824 AA; 93345 MW; 43DA21022766569B CRC64;
MNHYGSNIDQ TELTFPFFRF GFTTIFLGYS VGGVNVSLTV IKSAKAIRLF YCLKEGNRST
TDLWLNEFLK VFPSNQSLNF ITVTHSTSLS RQVEFEANTR DVIPLFSITY VIAIVFSIVS
CLRFDCVRNK VWVATFGVLS AGLAVLSAFG MMLHIGVPFV MTVANSPFLI LGIGVDDMFI
LISCWQQTNV HARVEDRLAD TYKEAAISIT ITTLTDVLAF YIGLMTPFRS VQSFCLYTST
AILFCFLYSI TFFGAFLVLN GRRENSNKHW LTCKEVPEDC PVGRSKWYDL CCVGGAYDRH
TGAEEVQPMN HFFKKHYGPF LVKPWTKVCV ILLYSVYLSI SIYGCFQIQE GIDLRNLAAD
DSYVNRYYDD EKAYFYEYGP NIMVIIRGEF KYWEEKNMLD LESCVEDFKN LSFIEKDIFT
SWLKSYKYYG YHTNLNLSVE NVFKTNLSSF LRSYSDFKQD VNFTNNSIRA SRFFIQTVNI
TTAIDEMNML NNLRDTARRC SVPLLVYHPV FIYHDQYAVI VSNTVQNISV TTAVMLLISL
LLIPNPLCCL WVTFSIASVI VGVTGFMALW DVNLDTISMI ILVVCIGFSV DFSAHISYAF
VSNKKPTANE KAVEALFHLG YPILQGALST ILGVIVLSAS KNYIFRTFFK IMFLVIFFGL
FHGITFIPVF LTFFDFFSSN SGNVSPQEKR ALENEAMTNC QLKNIQEKAV DHDKQIYDNH
TFLPDNQQLF PTQACPSVWT LTVNTHPTQS GQMCMASTVP MFRVDSQTYE VQMYTASNDA
VTVNCNQNLG AGEHHCVIGN NQPPVSQECN APFINCSDSA DPVP
//
