ID   A0A060X5I6_ONCMY        Unreviewed;      1471 AA.
AC   A0A060X5I6;
DT   03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT   03-SEP-2014, sequence version 1.
DT   24-JAN-2024, entry version 25.
DE   RecName: Full=Cleavage and polyadenylation specific factor 1 {ECO:0008006|Google:ProtNLM};
GN   ORFNames=GSONMT00023775001 {ECO:0000313|EMBL:CDQ74853.1};
OS   Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes;
OC   Salmonidae; Salmoninae; Oncorhynchus.
OX   NCBI_TaxID=8022 {ECO:0000313|EMBL:CDQ74853.1, ECO:0000313|Proteomes:UP000193380};
RN   [1] {ECO:0000313|EMBL:CDQ74853.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=24755649; DOI=10.1038/ncomms4657;
RA   Berthelot C., Brunet F., Chalopin D., Juanchich A., Bernard M., Noel B.,
RA   Bento P., Da Silva C., Labadie K., Alberti A., Aury J.M., Louis A.,
RA   Dehais P., Bardou P., Montfort J., Klopp C., Cabau C., Gaspin C.,
RA   Thorgaard G.H., Boussaha M., Quillet E., Guyomard R., Galiana D., Bobe J.,
RA   Volff J.N., Genet C., Wincker P., Jaillon O., Roest Crollius H.,
RA   Guiguen Y.;
RT   "The rainbow trout genome provides novel insights into evolution after
RT   whole-genome duplication in vertebrates.";
RL   Nat. Commun. 5:3657-3657(2014).
RN   [2] {ECO:0000313|EMBL:CDQ74853.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Genoscope - CEA;
RL   Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the CPSF1 family.
CC       {ECO:0000256|ARBA:ARBA00038446}.
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DR   EMBL; FR905004; CDQ74853.1; -; Genomic_DNA.
DR   STRING; 8022.A0A060X5I6; -.
DR   PaxDb; 8022-A0A060X5I6; -.
DR   Proteomes; UP000193380; Unassembled WGS sequence.
DR   GO; GO:0005634; C:nucleus; IEA:InterPro.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   Gene3D; 1.10.150.910; -; 1.
DR   Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 2.
DR   InterPro; IPR004871; Cleavage/polyA-sp_fac_asu_C.
DR   InterPro; IPR018846; Cleavage/polyA-sp_fac_asu_N.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   PANTHER; PTHR10644:SF2; CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1; 1.
DR   PANTHER; PTHR10644; DNA REPAIR/RNA PROCESSING CPSF FAMILY; 1.
DR   Pfam; PF03178; CPSF_A; 1.
DR   Pfam; PF10433; MMS1_N; 2.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000193380}.
FT   DOMAIN          92..546
FT                   /note="Cleavage/polyadenylation specificity factor A
FT                   subunit N-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF10433"
FT   DOMAIN          587..687
FT                   /note="Cleavage/polyadenylation specificity factor A
FT                   subunit N-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF10433"
FT   DOMAIN          1102..1436
FT                   /note="Cleavage/polyadenylation specificity factor A
FT                   subunit C-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF03178"
FT   REGION          399..448
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          550..588
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          776..802
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          927..948
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        550..564
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        927..942
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1471 AA;  164971 MW;  83C3FF9B15C95B8E CRC64;
     MYAVYRQAHS PTAIEFSVYC NFISNEEKNL VVAGTSQLYV YRIIHDVENA SKTDKSPDVK
     SRKEKLEQVA CFSLFGNVMS MASVQLVGAN RDALLLSFKD AKLSVVEYDP GTHDLKTLSL
     HFFEEPELRD GFVQNLHIPM VRVDPENRCA VMLVYGTQLV VLPFRKDTLT DEQEGVVEGP
     KSSFLPSYII DVRELDEKLL NIVDMKFLHG YYEPTLLILY EPNQTWPGRV AVRQDTCSIV
     AISLNIMQKV HPVIWSLSNL PFDCTQVMAV PKPIGGVVVF AVNSLLYLNQ SVPPYGVSLN
     TQTTGTTAFP LRIQEEVKIT LDCSQSTFIG SDKMVISLKG GEIYVLTLIT DGMRSVRAFH
     FDKAAASVLT TCMMTMEPGY LFLGSRLGNS LLLKYTEKYQ ENPEKPPVEE DKGKEEETDE
     EKQEEPPSKK KRIDSSTNLT GKNQLPDEVD EIEVYGSEVA SGTQLATYSF EVCDSILNIG
     PCAGASMGEP AFLSEEFQTN PEPDLEIVVC SGFGKNGGLS VLQRSIRPQV VTTFELPGCH
     DMWTVIPNEM KEKGKKKDKP PATEEEGETP EEEEAEEKPA PVEGDKKKHG FLILSREDST
     MILQTGQEIM ELDTSGFATQ GPTVFAGNIG DNKYIIQVSP MGIRLLEGVT QLHFIPVDLG
     SPIVQCSVAD PYVVIMTADG VVTMFVLKTD SYMGKTHRLA LQKPQIAAQP RVITLCTFRD
     VSGMFTTENK QTSHTKDQDT MFNSQSETET IMQDLSNTVD DEEEMLYGDC NPAGITPTKD
     ESHPGYRPSG ALGGGSEGRS GRAEPTHWCM MVRENGVMEI YQLPDWRLVF LVKNFPVGQR
     VLVDSSAGQS AAQGEGKKEE VTRQGEIPLV KEVALVSLGN NHCRPYLLVH VEQELLIYEA
     FPYDQQQAQS NLKVRFKKMP HNINFREKKS KVKKDKKAEG QAGPSEEGPA VVKGRVARFR
     YFEDISGYSG VFICGPSPHW MLVTSRGALR LHPMTIDGPI ESFSPFHNIN CPKGFLYFNK
     QGELRISVLP TYLSYDAPWP VRKIPLRCTV HYVSYHVESK VYAVCTSVKD PCTRIPRMTG
     EEKEFETIDR DERYIPPQQE NFSIQLISPV SWEAIPNTRI DLEEWEHVTC MKTVALRSQE
     TVSGLKGYIA AGTCLMQGEE VTCRGRILIL DVIEVVPEPG QPLTKNKFKV LYEKEQKGPV
     TALCHCSGYL VSAIGQKIFL WSLKDNDLTG MAFIDTQLYI HQMFSIKNFI VAADVMKSIS
     LLRYQPESKT LSLISRDAKP LEVYSVEFMV DNNQLGFLVS DRDQNISVYM YLPEAKESFG
     GMRLLRRADF NVGAHVNAFW RMPCRGALDT ATKKTLAWDN KHITWFATLD GGIGLLLPMQ
     EKTYRRLLML QNALTTMLPH HAGLNPKAFR MLHADRRQLQ NAVRNILDGE LLNKYLYLST
     MERSELAKKI GTTSDIILDD LLEVDRVTAH F
//