ID A0A060XMF2_ONCMY Unreviewed; 1224 AA.
AC A0A060XMF2;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 27-MAR-2024, entry version 28.
DE RecName: Full=C2H2-type domain-containing protein {ECO:0000259|PROSITE:PS50157};
GN ORFNames=GSONMT00004016001 {ECO:0000313|EMBL:CDQ80646.1};
OS Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes;
OC Salmonidae; Salmoninae; Oncorhynchus.
OX NCBI_TaxID=8022 {ECO:0000313|EMBL:CDQ80646.1, ECO:0000313|Proteomes:UP000193380};
RN [1] {ECO:0000313|EMBL:CDQ80646.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=24755649; DOI=10.1038/ncomms4657;
RA Berthelot C., Brunet F., Chalopin D., Juanchich A., Bernard M., Noel B.,
RA Bento P., Da Silva C., Labadie K., Alberti A., Aury J.M., Louis A.,
RA Dehais P., Bardou P., Montfort J., Klopp C., Cabau C., Gaspin C.,
RA Thorgaard G.H., Boussaha M., Quillet E., Guyomard R., Galiana D., Bobe J.,
RA Volff J.N., Genet C., Wincker P., Jaillon O., Roest Crollius H.,
RA Guiguen Y.;
RT "The rainbow trout genome provides novel insights into evolution after
RT whole-genome duplication in vertebrates.";
RL Nat. Commun. 5:3657-3657(2014).
RN [2] {ECO:0000313|EMBL:CDQ80646.1}
RP NUCLEOTIDE SEQUENCE.
RA Genoscope - CEA;
RL Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the sal C2H2-type zinc-finger protein family.
CC {ECO:0000256|ARBA:ARBA00038474}.
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DR EMBL; FR905634; CDQ80646.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A060XMF2; -.
DR STRING; 8022.A0A060XMF2; -.
DR PaxDb; 8022-A0A060XMF2; -.
DR Proteomes; UP000193380; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd20908; SUF4-like; 1.
DR Gene3D; 3.30.160.60; Classic Zinc Finger; 6.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR InterPro; IPR013087; Znf_C2H2_type.
DR PANTHER; PTHR23233; SAL-LIKE PROTEIN; 1.
DR PANTHER; PTHR23233:SF46; SAL-LIKE PROTEIN 3; 1.
DR Pfam; PF00096; zf-C2H2; 5.
DR SMART; SM00355; ZnF_C2H2; 8.
DR SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 4.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 7.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 7.
PE 3: Inferred from homology;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000193380};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00042}.
FT DOMAIN 389..416
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 417..444
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 667..694
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 695..722
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 727..754
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 1047..1074
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 1075..1102
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT REGION 49..73
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 96..130
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 248..319
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 505..537
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 869..942
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 49..70
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 515..537
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 869..895
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 904..939
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1224 AA; 131959 MW; 6D2C24B18039C5FB CRC64;
MTQTSRSGSE ETHVCEKCCA EFFKWSDFCE HLTSCIKNPL VLIVNENETE PSRDEDAGEG
SSHSPGEDDE GAEIALEGSS ALDKEDEPME LSLEKPVDLE ESDTSPQPDG ALPQLCDPAP
SSGKSYSMPS TNVTLETLHS TSVAVAQFSQ SVHAAVAGSG VSPLAIPMIL DQLMALQQQQ
IHQLQLIEQI RSQVAQPSGP SSSSLPAVPS QLQQLHNFIT PPVHQLPIRL PSPLNSLGSS
SSSLTSAIDG PLFSHTQQSS NQQSNVSMPN TTSANSSFPP SSGNVLSSSG AESTGGGGMS
SSSTALPRNS SSPLSLGHSS LLSTSPSNLP LIPHSSSSSV IFPNPLASIA ATANALDPLS
ALMRHRKGKP PNVSVFDTKP SSEDPFFKHK CRFCAKVFGS DSALQIHLRS HTGERPFKCN
ICGNRFSTKG NLKVHFQRHK EKYPHVQMNP YPVPEYLDNV PTSSGVPYGM SFPPEKPVTT
WLDSKPVLPT VPTSVGLQFP TTLPSMMGGY GDSPSLTPLS RSPQRPSPPS SECASRSPNL
FTEAGMITTS QSPQPNLGGD MPPILKPEGI HLPPNLPTSR PGENTTTTTT VTQVVLATTV
NATTSTSSYT EPIIAPSSVS HPILPMISDQ FKAKFPFGGL LDSMQTSETS KLQQLVENID
KKMTDPNQCV ICHRVLSCQS ALKMHYRIHT GERPFKCKVC GRAFTTKGNL KTHFGVHRSK
PPLRVQHSCP ICQKKFTNAV VLQQHIRMHM GGQIPNTPLP ESLQEMDTDL SFDEKSLDAM
SNYDDELLDE MEAAMEDEAE LKEGEMMMDP SKPLHPYSGI IAALENQMKM IDSSVNMSRS
FGLKPMQNGG GFGGENDFFN NDSLYASGDL EGQSVGSPAL SESSGSMQPL SPAHSHPESH
RSKSPATLNH SSSTAAEGQE NNGMATVKSE KSDTPSPAPV SEGNVALDLT ASLTQPSRHF
IKEENHFNMM FLGRDRGLSN SSLLNTASNM IKMEMNGHRH RKPMSLNDGP YMPVGIQVPA
SAPQTNMSPS ITPMLAPPTP RRTPKQHNCH NCGKNFSSAS ALQIHERTHT GEKPFGCSIC
GRAFTTKGNL KVHMGTHMWN NAPARRGRRL SVENPMALLG GDAMKFSEMF QKDLAARAMN
VDPGFWNQYA AAITNGLAMK NNEISVIQNG GLPQLPVSLG MDHMDRVNAS SSPPMTGLDK
TVLEVGARRP FARFMEENKE IGIN
//
