ID A0A060XY94_ONCMY Unreviewed; 963 AA.
AC A0A060XY94;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 27-MAR-2024, entry version 31.
DE RecName: Full=TAFH domain-containing protein {ECO:0000259|PROSITE:PS51119};
GN ORFNames=GSONMT00011697001 {ECO:0000313|EMBL:CDQ84648.1};
OS Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes;
OC Salmonidae; Salmoninae; Oncorhynchus.
OX NCBI_TaxID=8022 {ECO:0000313|EMBL:CDQ84648.1, ECO:0000313|Proteomes:UP000193380};
RN [1] {ECO:0000313|EMBL:CDQ84648.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=24755649; DOI=10.1038/ncomms4657;
RA Berthelot C., Brunet F., Chalopin D., Juanchich A., Bernard M., Noel B.,
RA Bento P., Da Silva C., Labadie K., Alberti A., Aury J.M., Louis A.,
RA Dehais P., Bardou P., Montfort J., Klopp C., Cabau C., Gaspin C.,
RA Thorgaard G.H., Boussaha M., Quillet E., Guyomard R., Galiana D., Bobe J.,
RA Volff J.N., Genet C., Wincker P., Jaillon O., Roest Crollius H.,
RA Guiguen Y.;
RT "The rainbow trout genome provides novel insights into evolution after
RT whole-genome duplication in vertebrates.";
RL Nat. Commun. 5:3657-3657(2014).
RN [2] {ECO:0000313|EMBL:CDQ84648.1}
RP NUCLEOTIDE SEQUENCE.
RA Genoscope - CEA;
RL Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the TAF4 family.
CC {ECO:0000256|ARBA:ARBA00006178}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; FR906507; CDQ84648.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A060XY94; -.
DR STRING; 8022.A0A060XY94; -.
DR PaxDb; 8022-A0A060XY94; -.
DR Proteomes; UP000193380; Unassembled WGS sequence.
DR GO; GO:0005669; C:transcription factor TFIID complex; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR GO; GO:0006366; P:transcription by RNA polymerase II; IEA:UniProt.
DR CDD; cd08045; TAF4; 1.
DR Gene3D; 1.20.120.1110; TAFH/NHR1 domain; 1.
DR InterPro; IPR045144; TAF4.
DR InterPro; IPR007900; TAF4_C.
DR InterPro; IPR037249; TAFH/NHR1_dom_sf.
DR InterPro; IPR003894; TAFH_NHR1.
DR PANTHER; PTHR15138; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4; 1.
DR PANTHER; PTHR15138:SF18; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4; 1.
DR Pfam; PF05236; TAF4; 1.
DR Pfam; PF07531; TAFH; 1.
DR SMART; SM00549; TAFH; 1.
DR SUPFAM; SSF158553; TAFH domain-like; 1.
DR PROSITE; PS51119; TAFH; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000193380};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 475..572
FT /note="TAFH"
FT /evidence="ECO:0000259|PROSITE:PS51119"
FT REGION 898..932
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 829..884
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 916..932
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 963 AA; 102170 MW; 8BB1C0498D7F965C CRC64;
MAAGSDLLDD VFFNTEVDEK VVSDLVGSLE SELTGSGRGK SSVRVQAAAN HIDNSAVGRN
SNVQDSEMGL SQELAKPGTG VPGGVINSRR SQGSTMYAAV GTTAVGSSMT AGHSPSKTGA
VSGVITEVPD HGAGIRKTGA AGVQTLNGRS VVINSHNSGS VAALVSSASS TVPAVAVVNN
GPSSVVKGNV VLPSTSSTVI QTPLMHNAVN STVISSQLSV LNSVPTVTLV RPPMQPLGTV
TAQSGSNNTV LIRSVNVAHP ASSEAQINTL ESPKTTTQTT SEVTSPSVVG KSLVLQNVRT
SIPSTIAACP GGIKAIAPQV FSPRLPQPQQ NASNIQNIQL PPGMVLVRSE SGQLLMIHQQ
TLAQMQSQSQ SAMTPRAATP TSTPPVQITS VQATGTPMMS RQVTPTITKQ GSTAQTTVQA
TTTLQRPPVL QQNTIMLGGA AATSGQAPVQ PCSAAVTQRA GTPGAPTVVS TMEILENVKK
CKNFLSTLIK LASSGKQSSE TTANVKELVK SLLESKIEAE DFTSRLYREL NSSPQPYLVP
FLKRSLPALR QMTPDSAAFI QQSQLPHTGA QPAAPSKALT AAVLGGMSTT QNSRLNSSSP
GAKGTMHQSP VISLAQTPHN KPGLMVPQQQ GAMGRPQVTL AQSPMVTLRG QPHSHIIMGQ
PQVVRQLQTV PVVKQALAPG AKVPLGPQSM LSVVLKNRQK EAGGGTFKDD DDINDVASMA
GVNLSEESAR ILATNSELVG MVTRSCKDEA FLYTSSLTQR VHEIGETHTH TYTHPHSVPK
IYDISCDQLR NLLEKLTVVA QQKSITFKED DKCEQVSDVR SQLKFFEQLD QMEKQRKEEQ
EREILMKAAK SRSRQEDPEQ LRLKQKAKEM QQQELNQIRQ KEANMTALAA IGPRKKRKMN
FPVSGTGAED LCSGPSPSGG YSSGGSRPQR QRITRVNLRD LLFCLENERE TSRSHLLYKG
LLK
//
