ID A0A060YQ34_ONCMY Unreviewed; 580 AA.
AC A0A060YQ34;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 24-JAN-2024, entry version 22.
DE RecName: Full=SSD domain-containing protein {ECO:0000259|PROSITE:PS50156};
GN ORFNames=GSONMT00053664001 {ECO:0000313|EMBL:CDQ93816.1};
OS Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes;
OC Salmonidae; Salmoninae; Oncorhynchus.
OX NCBI_TaxID=8022 {ECO:0000313|EMBL:CDQ93816.1, ECO:0000313|Proteomes:UP000193380};
RN [1] {ECO:0000313|EMBL:CDQ93816.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=24755649; DOI=10.1038/ncomms4657;
RA Berthelot C., Brunet F., Chalopin D., Juanchich A., Bernard M., Noel B.,
RA Bento P., Da Silva C., Labadie K., Alberti A., Aury J.M., Louis A.,
RA Dehais P., Bardou P., Montfort J., Klopp C., Cabau C., Gaspin C.,
RA Thorgaard G.H., Boussaha M., Quillet E., Guyomard R., Galiana D., Bobe J.,
RA Volff J.N., Genet C., Wincker P., Jaillon O., Roest Crollius H.,
RA Guiguen Y.;
RT "The rainbow trout genome provides novel insights into evolution after
RT whole-genome duplication in vertebrates.";
RL Nat. Commun. 5:3657-3657(2014).
RN [2] {ECO:0000313|EMBL:CDQ93816.1}
RP NUCLEOTIDE SEQUENCE.
RA Genoscope - CEA;
RL Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the patched family.
CC {ECO:0000256|ARBA:ARBA00005585}.
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DR EMBL; FR916099; CDQ93816.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A060YQ34; -.
DR STRING; 8022.A0A060YQ34; -.
DR PaxDb; 8022-A0A060YQ34; -.
DR Proteomes; UP000193380; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR Gene3D; 1.20.1640.10; Multidrug efflux transporter AcrB transmembrane domain; 1.
DR InterPro; IPR003392; Ptc/Disp.
DR InterPro; IPR000731; SSD.
DR PANTHER; PTHR10796:SF15; PATCHED DOMAIN-CONTAINING PROTEIN 4; 1.
DR PANTHER; PTHR10796; PATCHED-RELATED; 1.
DR Pfam; PF02460; Patched; 1.
DR SUPFAM; SSF82866; Multidrug efflux transporter AcrB transmembrane domain; 1.
DR PROSITE; PS50156; SSD; 1.
PE 3: Inferred from homology;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000193380};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 68..90
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 102..129
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 198..219
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 394..417
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 423..443
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 496..514
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 526..547
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 1..128
FT /note="SSD"
FT /evidence="ECO:0000259|PROSITE:PS50156"
SQ SEQUENCE 580 AA; 66858 MW; CE9DFC248EEB2954 CRC64;
MHVLCYINFK MLPYLYTDHE YCVFTGIGIT KVCVPVISGH GTKGVFELLA GWRRTRESLP
FKERVADAFA DVMVCYTMTS SLYIITFGMG ASPFTNIESV KIFCQSMCVA VLVNYFYVFS
FYGSCLVFAG QLEQNRYHSV FCCKIPSVEY LDRQPTWFKT MMSDGHDHVT HHEVLPYHNH
FIQHFLREHY TEWITNTYVK PFVVILYLIY ASFSFMGCLQ ISDGSNIVNL LASNTPSVSY
ATTQQKYFSN YSPVIGFYIY EPIEYWNSTV QEHLTTLSHG FNKISWMDNY FQYLKVVNVS
ASTKSDFITI LQGSFLRSPE YQHFMEDIIL SKTDGDEMEI IASRMYLVAR TTEKTREEVV
ELLERLRPLS LINNIKFIVF NPTFVFMDRY SSSVVSPILT SAFSVLTILI LTFFLVINPL
GNFWLILTVT SVELGVLGLM TLWNVHMDSI SILCLIYTLN FAMDHCAPHL YTFVLATEHT
RTQCIKISLE EHGAAILQNA CCFIIGMLPL VFVPSNLTYT LFKCSLLTAG CTVLHCFVIL
PVFLTFFPPE REMMERERVR EREEIECIEV RENPDHVTNV
//
