ID   A0A061DGZ8_THECC        Unreviewed;       706 AA.
AC   A0A061DGZ8;
DT   03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT   03-SEP-2014, sequence version 1.
DT   27-MAR-2024, entry version 43.
DE   SubName: Full=Tetratricopeptide repeat-like superfamily protein {ECO:0000313|EMBL:EOX91026.1};
GN   ORFNames=TCM_000339 {ECO:0000313|EMBL:EOX91026.1};
OS   Theobroma cacao (Cacao) (Cocoa).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX   NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX91026.1, ECO:0000313|Proteomes:UP000026915};
RN   [1] {ECO:0000313|EMBL:EOX91026.1, ECO:0000313|Proteomes:UP000026915}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX   PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA   Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA   Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA   Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA   Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA   Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA   Kuhn D.N.;
RT   "The genome sequence of the most widely cultivated cacao type and its use
RT   to identify candidate genes regulating pod color.";
RL   Genome Biol. 14:R53.1-R53.24(2013).
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DR   EMBL; CM001879; EOX91026.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A061DGZ8; -.
DR   EnsemblPlants; EOX91026; EOX91026; TCM_000339.
DR   Gramene; EOX91026; EOX91026; TCM_000339.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_15_10_1; -.
DR   InParanoid; A0A061DGZ8; -.
DR   OMA; EWGEQLH; -.
DR   Proteomes; UP000026915; Chromosome 1.
DR   GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 6.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR045215; PPR_prot_At1g15510.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 7.
DR   PANTHER; PTHR24015:SF1799; OS05G0581300 PROTEIN; 1.
DR   PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF01535; PPR; 5.
DR   Pfam; PF12854; PPR_1; 1.
DR   Pfam; PF13041; PPR_2; 3.
DR   SUPFAM; SSF48452; TPR-like; 1.
DR   PROSITE; PS51375; PPR; 4.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          177..211
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          278..312
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          379..413
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          480..514
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   706 AA;  78673 MW;  D7D51BB7A5315B6C CRC64;
     MVLSIRSCNL RKLCIAFVEN RDILVSQTTP SISSLKAHVP NYINMPQLNS HLKQLVKKGH
     LNEARQMFDE MPHRDEISWT TMISGYVNAM KSNEALLLFS KMWVSPGLSM DPFSLSIALK
     VCALDFNLSY GESLHGYLVK SGFINSVFVG SALLDMYTKF GKIEQGIKVF DEMPFKNVVS
     WTAIITGLVH GGYFKKGLVY LSEMRKSGVG YDSYTLAIAL KACACLGALN MGREIHTHTI
     KRGFHDTSFV ANSLSTMYNK CGKLDYGLHL FEKMHSRDVV SWTSIITTYV QTGEEKNAIE
     AFIRMRESGV SPNEFTFAAV ISGCSGLVRI SWGEQLHAHV VHTGLADSLS VANSLMTMYS
     KCGQISSASM VFHEMTRKDI ISWSTIIAVY SQGGCGEEAL EYLSWMRREG PKPTEFAFAS
     VLSVCGNMSI LEQGRQVHAH VLSVGLQQDA SIQSALINMY SKCGCIKEAE RVFNEAKNYD
     IVSWTAMING YAEHGYSHET INLFEMLTKV GLKPDSVTFI GLLTACSHAG LADLGFYYFN
     LMSNEHQISP SKEHYGCMID LLCRAGRLTE AERMIRSMPF HRDDVVWSTL LRACRVHGDV
     DCGRRAAEKL LEMDPNCAGT HITLANIYAA KGKWREAADV RKMMRSKGVI KEPGWSWIKV
     KDQVSAFVAG ERSYPEGELI YGMLDLLASR VDMSVQELGS LLDLED
//