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Database: UniProt
Entry: A0A061DMJ7_THECC
LinkDB: A0A061DMJ7_THECC
Original site: A0A061DMJ7_THECC 
ID   A0A061DMJ7_THECC        Unreviewed;       546 AA.
AC   A0A061DMJ7;
DT   03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT   03-SEP-2014, sequence version 1.
DT   28-JUN-2023, entry version 34.
DE   SubName: Full=DNA/RNA polymerases superfamily protein {ECO:0000313|EMBL:EOX94044.1};
GN   ORFNames=TCM_003127 {ECO:0000313|EMBL:EOX94044.1};
OS   Theobroma cacao (Cacao) (Cocoa).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX   NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX94044.1, ECO:0000313|Proteomes:UP000026915};
RN   [1] {ECO:0000313|EMBL:EOX94044.1, ECO:0000313|Proteomes:UP000026915}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX   PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA   Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA   Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA   Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA   Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA   Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA   Kuhn D.N.;
RT   "The genome sequence of the most widely cultivated cacao type and its use
RT   to identify candidate genes regulating pod color.";
RL   Genome Biol. 14:R53.1-R53.24(2013).
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DR   EMBL; CM001879; EOX94044.1; -; Genomic_DNA.
DR   EnsemblPlants; EOX94044; EOX94044; TCM_003127.
DR   Gramene; EOX94044; EOX94044; TCM_003127.
DR   eggNOG; KOG0017; Eukaryota.
DR   HOGENOM; CLU_037075_0_0_1; -.
DR   InParanoid; A0A061DMJ7; -.
DR   Proteomes; UP000026915; Chromosome 1.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   CDD; cd00303; retropepsin_like; 1.
DR   Gene3D; 2.40.70.10; Acid Proteases; 1.
DR   Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR   InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR   InterPro; IPR005162; Retrotrans_gag_dom.
DR   InterPro; IPR001878; Znf_CCHC.
DR   InterPro; IPR036875; Znf_CCHC_sf.
DR   PANTHER; PTHR35046:SF10; CCHC-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR35046; ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN; 1.
DR   Pfam; PF03732; Retrotrans_gag; 1.
DR   Pfam; PF00098; zf-CCHC; 1.
DR   SMART; SM00343; ZnF_C2HC; 1.
DR   SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR   PROSITE; PS50158; ZF_CCHC; 1.
PE   4: Predicted;
KW   Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW   Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW   Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW   Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT   DOMAIN          260..276
FT                   /note="CCHC-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50158"
FT   REGION          1..32
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          222..252
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..15
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        238..252
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   546 AA;  62817 MW;  3033E6F7C4A12AC8 CRC64;
     MENPEGDHNP LEIHDLEDDD EFENENPFHE DGPXXXSLEN YFEWKPMAEN RKVLFVKLKL
     KGTALQWWKR VEEQRARQGK LKISTWEHMK SKLRKQFLPA DYTMELYEKF HCLKQNNMTV
     EEYTSEFNNL SIRVGLAESN EQITSRYLAG LNHSIRDEMG VVRLYNIEDA RQYALSAEKR
     VLRYGARKPL YGTHWQNNSE ARRGYPTSQQ NYQGAATINK TNKGATNVEK NDKGKSIMPY
     GGQNSSGSST NKGGSNSHIR CFTCGEKGHI SFACPQRRVN LAELGEELEP VYDEYEEEVE
     EIDVYPAQGE SLVVRRVMTT TVNEEAEDWK RRSIFRTRVV CEGKVCDLVI DGGSMENIIS
     KEAVNKLKLP TNKHPYPYKI GWLKKGHEVP VTTQCLVKFT MGNNLDDEAL CDVVPMDVGH
     ILVGRPWLYD HDMVHKTKPN TYSFYKNNKR YTLYPLREET KKSANNKISK ITGYLSAENF
     EAEGSEMGIT YALVTKHLKS DQMSKSPQYP TEIQQLLKEF GELFNEDLPK SLPPLRSIQH
     AIDLVP
//
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