ID A0A061DVQ8_THECC Unreviewed; 262 AA.
AC A0A061DVQ8;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 27-MAR-2024, entry version 55.
DE SubName: Full=AGAMOUS-like 20 isoform 2 {ECO:0000313|EMBL:EOX96136.1};
GN ORFNames=TCM_005456 {ECO:0000313|EMBL:EOX96136.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX96136.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOX96136.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; CM001879; EOX96136.1; -; Genomic_DNA.
DR RefSeq; XP_007051979.1; XM_007051917.2.
DR AlphaFoldDB; A0A061DVQ8; -.
DR SMR; A0A061DVQ8; -.
DR EnsemblPlants; EOX96136; EOX96136; TCM_005456.
DR EnsemblPlants; Tc01v2_t031220.2; Tc01v2_p031220.2; Tc01v2_g031220.
DR GeneID; 18614250; -.
DR Gramene; EOX96136; EOX96136; TCM_005456.
DR Gramene; Tc01v2_t031220.2; Tc01v2_p031220.2; Tc01v2_g031220.
DR KEGG; tcc:18614250; -.
DR eggNOG; KOG0014; Eukaryota.
DR InParanoid; A0A061DVQ8; -.
DR OrthoDB; 779108at2759; -.
DR Proteomes; UP000026915; Chromosome 1.
DR GO; GO:0005737; C:cytoplasm; IEA:EnsemblPlants.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0010077; P:maintenance of inflorescence meristem identity; IEA:EnsemblPlants.
DR GO; GO:0009911; P:positive regulation of flower development; IEA:EnsemblPlants.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR GO; GO:0009409; P:response to cold; IEA:EnsemblPlants.
DR GO; GO:0009739; P:response to gibberellin; IEA:EnsemblPlants.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; Transcription factor, MADS-box; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR PANTHER; PTHR48019:SF228; MADS-BOX TRANSCRIPTION FACTOR FBP28; 1.
DR PANTHER; PTHR48019; SERUM RESPONSE FACTOR HOMOLOG; 1.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SRF-like; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS00350; MADS_BOX_1; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 15..32
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 50..110
FT /note="MADS-box"
FT /evidence="ECO:0000259|PROSITE:PS50066"
FT DOMAIN 134..224
FT /note="K-box"
FT /evidence="ECO:0000259|PROSITE:PS51297"
FT COILED 168..217
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 262 AA; 30163 MW; 60225C35DE779638 CRC64;
MFLCLLDFPN FASQASYLLC FFHFFSLLLL LLPQDKKSSK FFPCLFGAEM VRGKTQMRRI
ENATSRQVTF SKRRNGLLKK AFELSVLCDA EVALIIFSPR GKLYEFASSS MQETIERYNR
HTKDTRTKPS EQNMQLLKTE AANMVKKIEL LEVSRRKLLG EGLGSCTLEE LLQIEQQLER
SVSSIRARKA QVFKEQIEQL KEKEKVLAAE NARLCEKCGM QPWQGSKEQK ENVPCDESSP
SIDVETELFI GPPERRTKCF LL
//
