ID A0A061EJG7_THECC Unreviewed; 1659 AA.
AC A0A061EJG7;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 24-JAN-2024, entry version 48.
DE RecName: Full=Ubiquitin-like protease family profile domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=TCM_019956 {ECO:0000313|EMBL:EOY04778.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY04778.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY04778.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
CC -!- SUBUNIT: Homodimer. {ECO:0000256|ARBA:ARBA00011738}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the GRAS family. {ECO:0000256|PROSITE-
CC ProRule:PRU01191}.
CC -!- SIMILARITY: Belongs to the peptidase C48 family.
CC {ECO:0000256|ARBA:ARBA00005234}.
CC -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC feature annotation. {ECO:0000256|PROSITE-ProRule:PRU01191}.
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DR EMBL; CM001882; EOY04778.1; -; Genomic_DNA.
DR EnsemblPlants; EOY04778; EOY04778; TCM_019956.
DR Gramene; EOY04778; EOY04778; TCM_019956.
DR eggNOG; KOG0778; Eukaryota.
DR eggNOG; KOG1121; Eukaryota.
DR HOGENOM; CLU_242206_0_0_1; -.
DR InParanoid; A0A061EJG7; -.
DR OMA; FAEIYDM; -.
DR Proteomes; UP000026915; Chromosome 4.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0008234; F:cysteine-type peptidase activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0009791; P:post-embryonic development; IEA:UniProt.
DR GO; GO:0006508; P:proteolysis; IEA:InterPro.
DR InterPro; IPR045259; DAYSLEEPER-like.
DR InterPro; IPR025525; hAT-like_transposase_RNase-H.
DR InterPro; IPR008906; HATC_C_dom.
DR InterPro; IPR038765; Papain-like_cys_pep_sf.
DR InterPro; IPR003653; Peptidase_C48_C.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR005202; TF_GRAS.
DR InterPro; IPR003656; Znf_BED.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR PANTHER; PTHR23272; BED FINGER-RELATED; 1.
DR PANTHER; PTHR23272:SF132; ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE ISOFORM X1; 1.
DR Pfam; PF05699; Dimer_Tnp_hAT; 1.
DR Pfam; PF03514; GRAS; 1.
DR Pfam; PF14372; hAT-like_RNase-H; 1.
DR Pfam; PF02902; Peptidase_C48; 1.
DR Pfam; PF02892; zf-BED; 1.
DR SMART; SM00614; ZnF_BED; 1.
DR SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 1.
DR SUPFAM; SSF54001; Cysteine proteinases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50985; GRAS; 1.
DR PROSITE; PS50600; ULP_PROTEASE; 1.
DR PROSITE; PS50808; ZF_BED; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00027}.
FT DOMAIN 696..750
FT /note="BED-type"
FT /evidence="ECO:0000259|PROSITE:PS50808"
FT DOMAIN 1443..1627
FT /note="Ubiquitin-like protease family profile"
FT /evidence="ECO:0000259|PROSITE:PS50600"
FT REGION 270..362
FT /note="SAW"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU01191"
FT REGION 1349..1408
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 200..204
FT /note="LXXLL motif"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU01191"
FT COMPBIAS 1349..1365
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1376..1395
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1659 AA; 191184 MW; 3B20A6BEE4F51011 CRC64;
MSSSALDALV ACAKAIQDEN LTVADSLLER IWNLAAAQSW PGESDVVKYF AEALVRRAYG
ISSASANFNL LSPPPIYFLD NFSCDAINTA CMGKKRFHLI TFLFLPSDDW TYLFRSLANA
SGNFLSVRVS VIVSPFLEKI VKIQQEKSKH DLTTAAMERG IKLEDLRVVY ANSLGDVDAS
KADFTRTTDE AVIVYYRYKL HELLADVRVM ERELLKLRQI NPEIVIIEEQ YADHNDSNFI
KRLEKSFQYY FNRFDFYEVT YCRQIVNIVG CEGTDRLERH QTLAQWRSLL RANGLLPVPL
APDIWSGEHE DNGCVVFQND DGLLHFTSAW KLTDAVDHFN PISYNPIQGF NPNPALEDTV
RTLQVDRQAS SLNGLAAFAE IYDMLEDVCL KYELPLALTW VKGTPNGIMS GLNKKRSLSI
ETAYSYINCC YYYYYDYYVE KISQYRSFMQ ECAIYDIQEG QAIAGQALQS NEPFLFEPNI
TELRSNPFAE AAQKSGLHAA LAICLVNHYT DDVYILEFFL SSSEEKLEEP KSLALRIFED
LKKMKTKFVK LRVHGTEVGL QEEAIPNIPW EEMPMRSSSP ATSNDQFLNS NASRSLNVVE
LKDRHVVEIQ GPNGQEAATS NFHPAYLSIH ASSMAGTEHF NATNLRSYNG LLETHEPQLQ
EITEKNWISQ TISNIDHEIV KANRENSALP RTKQRKLVSK VWKEFTKFEE NGKQLAKCNH
CSKEFTGSSK SGTTHLKNHL ERCPRKKNEY QERQLKLSVK TGDLTNRDTS EGNSMFDQEK
SRLDLVKMII KHQYPLDVAE QEFFKSFVQN LQPMFEFQSQ ATIISDIHHI YEEEKKKLQQ
CFAQFACKFS LTISLWKDNL RKNAYCCLIA HFVDDDWELR RKILVFKNLE HNYGTGSIIR
VIQNSISEWN MSEKVCSISV DNSSLNNGIL QQIKESCLSD QVSLPSCHYY SSCTLIQDGL
HEIDDILLKL RKSIEYVTEL EHGKLKFQEA INQVTLQGGK STDYGPLRLD SNFSILDSAL
ESRQIFCQLE QIDGHFKVNP SIEEWERALI LHSYLKGFYD NLSSFRQTHS STANTYFPQL
CDMYKKFLQM EKKNYPFMMK RKFDDHWSLC NLVFAIAALL DPRLKFKFVE FSYGEIYGRD
SKRQLKRFHR DLMDIYFEYA YEPRNRTTSA SVGCLTRQST ESANDSILDS FSRYASASNF
NEVSSRKSDL DCYLEEPLLH LDGAFFDVLD WWRVNSERFP TLGRMAHDLL AMPVLVVPPC
SDFSAVITNP AHNGLNPETM EALVCSHNWL EMPKGNDRAN HAPMQNTAKR KWEEKETREV
KSCKNWNSEE TNNADKAKAS YKMLTRALPL ENDRQEGRPL KSSEPNHGKD TSGLIEIPNG
SPSFDNQSEF QCYSSDESDG EIAGREQGEW REDDVRRYLL LPLTEKGRKR LNKWRNHKMS
GKLIGRDKEF GVLDYKLAPL LTVPHGVETQ VKYYIDDSVV NTFFKLLKKR SDRFPKAYVS
HYSFDSWIAT YLIEGSRSES QVFSWFKDEK LKDVQILFLP ACLSAHWVLF CVDTKKRTFS
WLDSNISSRT SNVAEKQAIL GWFKRLLLPA FGYQNANEWP FEIRSDIPEQ KNGVDCGLFV
MKYADCLTHG EFFPFTQQHM PYFRLRTFLD IYRGRLHSQ
//
