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Database: UniProt
Entry: A0A061ENL1_THECC
LinkDB: A0A061ENL1_THECC
Original site: A0A061ENL1_THECC 
ID   A0A061ENL1_THECC        Unreviewed;       974 AA.
AC   A0A061ENL1;
DT   03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT   03-SEP-2014, sequence version 1.
DT   24-JAN-2024, entry version 52.
DE   SubName: Full=DNA repair protein xp-C / rad4, putative isoform 1 {ECO:0000313|EMBL:EOY03914.1};
GN   ORFNames=TCM_019127 {ECO:0000313|EMBL:EOY03914.1};
OS   Theobroma cacao (Cacao) (Cocoa).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX   NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY03914.1, ECO:0000313|Proteomes:UP000026915};
RN   [1] {ECO:0000313|EMBL:EOY03914.1, ECO:0000313|Proteomes:UP000026915}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX   PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA   Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA   Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA   Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA   Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA   Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA   Kuhn D.N.;
RT   "The genome sequence of the most widely cultivated cacao type and its use
RT   to identify candidate genes regulating pod color.";
RL   Genome Biol. 14:R53.1-R53.24(2013).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- SIMILARITY: Belongs to the XPC family. {ECO:0000256|ARBA:ARBA00009525}.
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DR   EMBL; CM001882; EOY03914.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A061ENL1; -.
DR   STRING; 3641.A0A061ENL1; -.
DR   EnsemblPlants; EOY03914; EOY03914; TCM_019127.
DR   Gramene; EOY03914; EOY03914; TCM_019127.
DR   eggNOG; KOG2179; Eukaryota.
DR   InParanoid; A0A061ENL1; -.
DR   OMA; FQAKHLG; -.
DR   Proteomes; UP000026915; Chromosome 4.
DR   GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR   GO; GO:0000111; C:nucleotide-excision repair factor 2 complex; IBA:GO_Central.
DR   GO; GO:0071942; C:XPC complex; IBA:GO_Central.
DR   GO; GO:0003684; F:damaged DNA binding; IBA:GO_Central.
DR   GO; GO:0003697; F:single-stranded DNA binding; IBA:GO_Central.
DR   GO; GO:0006298; P:mismatch repair; IBA:GO_Central.
DR   GO; GO:0006289; P:nucleotide-excision repair; IBA:GO_Central.
DR   Gene3D; 2.20.20.110; Rad4, beta-hairpin domain BHD1; 1.
DR   Gene3D; 3.30.70.2460; Rad4, beta-hairpin domain BHD3; 1.
DR   Gene3D; 3.90.260.10; Transglutaminase-like; 1.
DR   InterPro; IPR018327; BHD_2.
DR   InterPro; IPR004583; DNA_repair_Rad4.
DR   InterPro; IPR038765; Papain-like_cys_pep_sf.
DR   InterPro; IPR018325; Rad4/PNGase_transGLS-fold.
DR   InterPro; IPR018326; Rad4_beta-hairpin_dom1.
DR   InterPro; IPR018328; Rad4_beta-hairpin_dom3.
DR   InterPro; IPR042488; Rad4_BHD3_sf.
DR   InterPro; IPR036985; Transglutaminase-like_sf.
DR   PANTHER; PTHR12135:SF0; DNA REPAIR PROTEIN COMPLEMENTING XP-C CELLS; 1.
DR   PANTHER; PTHR12135; DNA REPAIR PROTEIN XP-C / RAD4; 1.
DR   Pfam; PF10403; BHD_1; 1.
DR   Pfam; PF10404; BHD_2; 1.
DR   Pfam; PF10405; BHD_3; 1.
DR   Pfam; PF03835; Rad4; 1.
DR   SMART; SM01030; BHD_1; 1.
DR   SMART; SM01031; BHD_2; 1.
DR   SMART; SM01032; BHD_3; 1.
DR   SUPFAM; SSF54001; Cysteine proteinases; 1.
PE   3: Inferred from homology;
KW   DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW   DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000026915}.
FT   DOMAIN          648..699
FT                   /note="Rad4 beta-hairpin"
FT                   /evidence="ECO:0000259|SMART:SM01030"
FT   DOMAIN          701..764
FT                   /note="Rad4 beta-hairpin"
FT                   /evidence="ECO:0000259|SMART:SM01031"
FT   DOMAIN          771..845
FT                   /note="Rad4 beta-hairpin"
FT                   /evidence="ECO:0000259|SMART:SM01032"
FT   REGION          1..60
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          106..125
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          887..927
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..16
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        40..55
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        111..125
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        887..904
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        905..921
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   974 AA;  107530 MW;  D5C073206ABB4E63 CRC64;
     MKVTCESDNG NPSGSIHDAG TLAGISQEGV NKLLRRANRR GSSRKEEKNE YLQKNDPKTN
     EQVVHTMIVQ NASMAEGCSR NAVGSSQLEV DVGSYVDNLF DDSEDMNDSD WEDGSIPKLD
     PVDNSPKERM KGLTIEFDEP SGSAGRKPVR RASAEDKEIA ELVHKVHLLC LLARGRLIDN
     ACDDPLIQAS LLSLVPTHLS KISGVSNITS NALSPLVTWF HNNFHVRSLV RAERSFHTAL
     AFALETREGT PEEIAALSVA LFRALKFTAR FVSILDVASL KPEADKCEPS SQEANRVGGG
     IFSTSTLMVA NPKEVSSSSY PVKSFSCSEK DGHCENSLRS SCKSKGGCPT SNDTQSRYST
     AVDEVTDRTS NLFACQAQLD TYGQCAPTKS QGLKRKGDLE FEMQLAMAIS ATTVGTLENS
     AGSLDVSNFN GNNSLDASTP SKRWKKIHRV ESATSSQGLS TALGSRKVGS PLFWAEVYCG
     GENLTGKWVH VDALNAIIDG EQKVEDAAAA CKTALRYVVA FAGRGAKDVT RRYCMKWYKI
     APKRVNSIWW DAVLAPLREL ESGATGGTIN MEKLHNNASN EQEKIKASGM SEYPGTDSPS
     NHVILPEKSG QEAFKEYGSK SEVESSTKHS LVATRNSLED MELETRALTE PLPTNQQAYK
     NHALYALERW LTKCQILHPR GPILGYCSGH PVYPRTCVQT LKPRERWLRE GLQVKGNEIP
     AKVLKRSAKL KKVQVSEEDD YEEIDSKGTI ELYGKWQLEP LCLPHAVDGI VPKNERGQVD
     VWSEKCLPPG TVHLRLPRVF SVAKRLEIDY APAMVGFEFR NGRAAPIFDG IVVCSEFKDA
     ILEAYAEEEE RRVAEEKKRN EAQAISRWYQ LLSSIITRQK LKSYYGDGSS SQASRNIQDK
     NNEINAPDES SKDDRQSTGL WKGDGEDTLC NIPSGTLVED HEHVFLRENE SFDAENSVRT
     KRCHCGFSIQ VEEL
//
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