ID   A0A061EXA8_THECC        Unreviewed;       626 AA.
AC   A0A061EXA8;
DT   03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT   03-SEP-2014, sequence version 1.
DT   27-MAR-2024, entry version 45.
DE   SubName: Full=Pentatricopeptide repeat (PPR) superfamily protein {ECO:0000313|EMBL:EOY09680.1};
GN   ORFNames=TCM_025073 {ECO:0000313|EMBL:EOY09680.1};
OS   Theobroma cacao (Cacao) (Cocoa).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX   NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY09680.1, ECO:0000313|Proteomes:UP000026915};
RN   [1] {ECO:0000313|EMBL:EOY09680.1, ECO:0000313|Proteomes:UP000026915}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX   PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA   Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA   Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA   Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA   Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA   Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA   Kuhn D.N.;
RT   "The genome sequence of the most widely cultivated cacao type and its use
RT   to identify candidate genes regulating pod color.";
RL   Genome Biol. 14:R53.1-R53.24(2013).
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC       {ECO:0000256|ARBA:ARBA00006643}.
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DR   EMBL; CM001883; EOY09680.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A061EXA8; -.
DR   EnsemblPlants; EOY09680; EOY09680; TCM_025073.
DR   Gramene; EOY09680; EOY09680; TCM_025073.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_37_8_1; -.
DR   InParanoid; A0A061EXA8; -.
DR   OMA; YARANKW; -.
DR   Proteomes; UP000026915; Chromosome 5.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR045215; PPR_prot_At1g15510.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 4.
DR   PANTHER; PTHR24015:SF96; OS01G0848300 PROTEIN; 1.
DR   PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF01535; PPR; 4.
DR   Pfam; PF13041; PPR_2; 1.
DR   PROSITE; PS51375; PPR; 4.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          86..120
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          187..217
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          218..252
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          319..353
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   DOMAIN          534..626
FT                   /note="DYW"
FT                   /evidence="ECO:0000259|Pfam:PF14432"
SQ   SEQUENCE   626 AA;  70468 MW;  AA1884BE82F6D534 CRC64;
     MNISSNSSSS SKVLNTLRLK NPKLLLLESC KNLSQLKIIH GHMIRTHIIF DIFAASRLIS
     LCTDPSFGTA LLDYAFKIFS QIETPNLFIF NALIKGFSAC QNPHQSFHFY TQLLRANILP
     DNLSFPFLVR ACAQLESLDM GIQAHGQIIK HGFESNVYVQ NSLVHMYSTC GDIKAANAIF
     QRMTFLNVVS WTSMIAGLNK VGDVEMARKL FDTMPEKNLV TWSIMISGYA KNSYFEKAVE
     LFQVLQEEGV QANETVMVSV ISSCAHLGAI ELGEKAHEYI FRNNLSLNVI LGTALVDMYA
     RCGSIEKAIG VFEELPERDV LSWTALIAGL AMHGYAERAL WFFSEMVKSG LKPRDISFTA
     VLSACSHGGL VGKGLELFGS MKRDFGIEPR LEHYGCVVDL LGRAGKLAEA EKFVLEMPVK
     PNAPIWGALL GACRIHRNAE IAERVGKILI PLLPEHSGYY VLLSNIYART NRWENVESMR
     QMMKEKGVKK PPGYSLIEVD GKVHNFTMGD KSHPEIDMIE RTWEAILKKI RLAGYSGNTS
     DALFDIDEEE KESALYRHSE KLAIAFGIMR TKASMPIRIV KNLRVCEDCH TATKLISKVF
     ERELIVRDRN RFHHFRHGTC SCMDYW
//