ID A0A061F045_THECC Unreviewed; 508 AA.
AC A0A061F045;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 24-JAN-2024, entry version 52.
DE SubName: Full=Sigma factor A isoform 1 {ECO:0000313|EMBL:EOY10268.1};
GN ORFNames=TCM_025640 {ECO:0000313|EMBL:EOY10268.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY10268.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY10268.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
CC -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC {ECO:0000256|ARBA:ARBA00007788}.
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DR EMBL; CM001883; EOY10268.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A061F045; -.
DR STRING; 3641.A0A061F045; -.
DR EnsemblPlants; EOY10268; EOY10268; TCM_025640.
DR Gramene; EOY10268; EOY10268; TCM_025640.
DR eggNOG; ENOG502QQ9I; Eukaryota.
DR HOGENOM; CLU_014793_3_4_1; -.
DR InParanoid; A0A061F045; -.
DR OMA; YGLENEC; -.
DR Proteomes; UP000026915; Chromosome 5.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0071482; P:cellular response to light stimulus; IEA:UniProt.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR GO; GO:0080005; P:photosystem stoichiometry adjustment; IEA:EnsemblPlants.
DR Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR PANTHER; PTHR30603:SF14; RNA POLYMERASE SIGMA FACTOR SIGA; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
DR PROSITE; PS00715; SIGMA70_1; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 293..306
FT /note="RNA polymerase sigma-70"
FT /evidence="ECO:0000259|PROSITE:PS00715"
SQ SEQUENCE 508 AA; 57458 MW; 5FA1E9DC277D8EEE CRC64;
MMATAAVIGL TTGKRLLSSS FSYSDIIEKL SYANDYGSSH HQTSSTKSLI VAKKSSNCSQ
SLPSSNRRAQ SIKALKEHVD SASIVSTAEP LFQGSNDLEV ESYDLDYSVE ALLLLQKSML
EKQWTLSFER TVFTESPSRK IHKKIPVTCS GVSARQRRFN TKRKILIQNK SIIQPNAKQL
RSLISPELLQ SRLKGYVKGV VSDELLSHAE VVRLSKKIKA GLSLEEHRLR LKERLGCEPS
DEQLATSLKI SRAELRSKLI ECSLAREKLA MSNVRLVMSI AQRYDNMGAE MSDLIQGGLI
GLLRGIEKFD SSKGYKISTY VYWWIRQGVS RALVENSRTL RLPTHLHERL GLIRNAKIRL
EEKGITPTID RIAESLNMSQ KKVRNATEAV SKVFSLDRDA FPSLNGLPGE THHSYIADNH
VENIPWHGVD EWALKDEVNR LITITLGERE REIIRLYYGL DKESLTWEDI SKRIGLSRER
VRQVGLVALE KLKHAARKKK MEAMLVKH
//
