ID   A0A061F544_THECC        Unreviewed;       709 AA.
AC   A0A061F544;
DT   03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT   03-SEP-2014, sequence version 1.
DT   22-FEB-2023, entry version 36.
DE   SubName: Full=Phytochrome interacting factor 3, putative isoform 3 {ECO:0000313|EMBL:EOY11782.1};
GN   ORFNames=TCM_026851 {ECO:0000313|EMBL:EOY11782.1};
OS   Theobroma cacao (Cacao) (Cocoa).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX   NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY11782.1, ECO:0000313|Proteomes:UP000026915};
RN   [1] {ECO:0000313|EMBL:EOY11782.1, ECO:0000313|Proteomes:UP000026915}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX   PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA   Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA   Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA   Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA   Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA   Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA   Kuhn D.N.;
RT   "The genome sequence of the most widely cultivated cacao type and its use
RT   to identify candidate genes regulating pod color.";
RL   Genome Biol. 14:R53.1-R53.24(2013).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR   EMBL; CM001883; EOY11782.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A061F544; -.
DR   EnsemblPlants; EOY11782; EOY11782; TCM_026851.
DR   Gramene; EOY11782; EOY11782; TCM_026851.
DR   Proteomes; UP000026915; Chromosome 5.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR   Gene3D; 4.10.280.10; Helix-loop-helix DNA-binding domain; 1.
DR   InterPro; IPR011598; bHLH_dom.
DR   InterPro; IPR036638; HLH_DNA-bd_sf.
DR   InterPro; IPR044273; PIF3-like.
DR   PANTHER; PTHR46807; TRANSCRIPTION FACTOR PIF3; 1.
DR   PANTHER; PTHR46807:SF1; TRANSCRIPTION FACTOR PIF3; 1.
DR   Pfam; PF00010; HLH; 1.
DR   SUPFAM; SSF47459; HLH, helix-loop-helix DNA-binding domain; 1.
DR   PROSITE; PS50888; BHLH; 1.
PE   4: Predicted;
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          466..518
FT                   /note="BHLH"
FT                   /evidence="ECO:0000259|PROSITE:PS50888"
FT   REGION          66..92
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          181..209
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          349..479
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          655..709
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        375..389
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        421..436
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        655..695
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   709 AA;  75372 MW;  57C6A778F9B3DB81 CRC64;
     MPLSELYRMA RGKLDSSQDK NPSCSTDLSF VPENDFVELV LENGQILMQG QSSKARRIPA
     CNSLPSHCLP SHTPKTRDKD TGNGGTNTKM GKFGTIDSVL SEIPMSVPSA EMSLNQDDEV
     VPWLNYPVDQ SLQSEYSDFL PELSGVAVNE TSTHSNFASF DRRSQSIRDS CTVSLNNGAV
     FEQGNPSKVP TPADGEARPR SGTSQLSTLP SQLCQTSSPF LRSRILENIG NSLGHTSTHH
     AIGGDSIGVQ ASDGGLPGIK MQKQDQVAPC NNTVLMNFSH FSRPAALVKA SLQNISAIAS
     IERIGSKEKG SAASISDPAD TTFIDSSIDL QKEKFSQCQP TIVLMKTDRK ESKAKSLDEP
     VTAEPIDAIC EENTPKNVKN PSQVTGESAS KGLPDGDKTV EPVLAASSVC SGNSVERASD
     DPVYNLKRKS RDNEESECPS EDAEEESVGV KKAVPARGGS GSKRSRAAEV HNLSERRRRD
     RINEKMRALQ ELIPNCNKVQ IMSMGAGLYM PPMMLPTGMQ HMHAAHMAHF SPMGVGLGMG
     MGFGMPLPDM NAGSSARPMV QVPPIHGAPF SGPGPTALQG MAGSNLQLFG LPGQGLPMSM
     PHTPLIPISG GHLMKPAMGL SACGLVGPMD NMGSATASSS KDPVQNINSQ VAQNTNVNSS
     MNQTPSQCPT TNQSFEQPAA VQENGQASEI TGSVPFRSAD GNEKVPDRS
//