ID A0A061F9Q1_THECC Unreviewed; 132 AA.
AC A0A061F9Q1;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 28-JUN-2023, entry version 27.
DE RecName: Full=Retrotransposon Copia-like N-terminal domain-containing protein {ECO:0000259|Pfam:PF14244};
GN ORFNames=TCM_032027 {ECO:0000313|EMBL:EOY13452.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY13452.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY13452.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
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DR EMBL; CM001885; EOY13452.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A061F9Q1; -.
DR EnsemblPlants; EOY13452; EOY13452; TCM_032027.
DR Gramene; EOY13452; EOY13452; TCM_032027.
DR eggNOG; KOG0017; Eukaryota.
DR HOGENOM; CLU_071438_1_1_1; -.
DR InParanoid; A0A061F9Q1; -.
DR OMA; DAMDSTH; -.
DR Proteomes; UP000026915; Chromosome 7.
DR InterPro; IPR029472; Copia-like_N.
DR PANTHER; PTHR37610; CCHC-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR37610:SF6; RETROTRAN_GAG_3 DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF14244; Retrotran_gag_3; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000026915}.
FT DOMAIN 35..80
FT /note="Retrotransposon Copia-like N-terminal"
FT /evidence="ECO:0000259|Pfam:PF14244"
SQ SEQUENCE 132 AA; 15098 MW; 17AA2D5A14457145 CRC64;
MSKSTNLRPQ MSQTSIDSRS PISLIADPQS PYFLHHTDHP RSVVINPKLT TNNYVVWSRS
FLLVLSIRNK IGFMNGTIPK LDATKPIFPS WTRCNNLLVA WLLDSITQPI ASIVFYVEST
MEIWNTFKQN FA
//