ID A0A061FTY1_THECC Unreviewed; 467 AA.
AC A0A061FTY1;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 24-JAN-2024, entry version 38.
DE SubName: Full=Transmembrane Fragile-X-F-associated protein isoform 1 {ECO:0000313|EMBL:EOY20930.1};
GN ORFNames=TCM_012254 {ECO:0000313|EMBL:EOY20930.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY20930.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY20930.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
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DR EMBL; CM001881; EOY20930.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A061FTY1; -.
DR STRING; 3641.A0A061FTY1; -.
DR EnsemblPlants; EOY20930; EOY20930; TCM_012254.
DR Gramene; EOY20930; EOY20930; TCM_012254.
DR eggNOG; KOG1100; Eukaryota.
DR HOGENOM; CLU_031159_0_0_1; -.
DR InParanoid; A0A061FTY1; -.
DR OMA; SWWIIFF; -.
DR Proteomes; UP000026915; Chromosome 3.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR019396; TM_Fragile-X-F-assoc.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR46859:SF3; RING-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR46859; TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN; 1.
DR Pfam; PF10269; Tmemb_185A; 1.
DR Pfam; PF13920; zf-C3HC4_3; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW Transmembrane {ECO:0000256|SAM:Phobius, ECO:0000313|EMBL:EOY20930.1};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175}.
FT TRANSMEM 12..30
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 36..55
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 76..98
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 104..122
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 143..166
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 178..198
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 420..455
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
SQ SEQUENCE 467 AA; 53107 MW; F2D9B5DA3FCD4B99 CRC64;
MSWRRVLKSV QALVAHSLLF CFTLLLLLKL DHVVSYSWWI IFFPLWMFHG VVVRGRFSLP
APSVPHNRQW APCHTIVATP LLIAFELLLC IYLESVYVHG FPAVNLKIIF LPLLAFEIII
LIDNFRMCRA LMPGDDESIS DEAIWETLPH FWVAISMVFF VAATIFTLLK LCGDVGALGW
WDLFINFGIA ESFAFLVCTK WSNPLIHRNS PAREAGPSNT TIRYLDWNGG LVVTPEEDQQ
QDTICGVQDI GGHIMKIPII GFQVLLCMRL EGTPAGARHI PLPILFSPLF LLHGAAVLFS
ASRLIEKIVL LLQSGAGTGL YFRFSSRAHD CLGFLHHGSR LLGWWSIDEG SREEQARLYH
DGVSGYNTFS GYPPEIVKKM PKKDLAEEVW RLQAALGEQT EITKFSQQEY ERLQNEKVLC
RVCFEREISV VLLPCRHRIL CSTCCEKCRK CPICRVCIEE RLPVYDV
//
