ID A0A061G6C1_THECC Unreviewed; 370 AA.
AC A0A061G6C1;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 03-MAY-2023, entry version 35.
DE SubName: Full=HMG box protein isoform 2 {ECO:0000313|EMBL:EOY24968.1};
GN ORFNames=TCM_016416 {ECO:0000313|EMBL:EOY24968.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY24968.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY24968.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
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DR EMBL; CM001881; EOY24968.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A061G6C1; -.
DR EnsemblPlants; EOY24968; EOY24968; TCM_016416.
DR Gramene; EOY24968; EOY24968; TCM_016416.
DR HOGENOM; CLU_041972_1_0_1; -.
DR Proteomes; UP000026915; Chromosome 3.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-UniRule.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd22006; HMG-box_AtHMGB6-like_rpt1; 1.
DR Gene3D; 1.10.30.10; High mobility group box domain; 2.
DR InterPro; IPR009071; HMG_box_dom.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR InterPro; IPR044601; HMGB6/HMGB13.
DR PANTHER; PTHR46912; HIGH MOBILITY GROUP B PROTEIN 13; 1.
DR PANTHER; PTHR46912:SF1; HIGH MOBILITY GROUP B PROTEIN 13; 1.
DR Pfam; PF00505; HMG_box; 2.
DR SMART; SM00398; HMG; 2.
DR SUPFAM; SSF47095; HMG-box; 2.
DR PROSITE; PS50118; HMG_BOX_2; 2.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Reference proteome {ECO:0000313|Proteomes:UP000026915}.
FT DOMAIN 179..247
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DOMAIN 295..344
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DNA_BIND 179..247
FT /note="HMG box"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT DNA_BIND 295..344
FT /note="HMG box"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT REGION 1..94
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 153..186
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 20..46
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 79..93
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 162..180
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 370 AA; 43293 MW; 9F8269ED364B8496 CRC64;
MADAAVVDVP KKSRNNGRKA LKQKNPSTNE ANILAQKLSQ ASPTPVASPM EADPSKENQE
GLSQPLTSPK KGKVAARGKQ GKQQQQSFEK DLQEMQEMLQ KLRIEKEKTE VLLKEKDEML
KMKEEELETK GKEQEKLQME FKKLQKMKEF KPTMTFPIAQ SLKDKEQDKK EKKKGGPEKK
RPSPPYILWC KDQWNEVKKE NPEADFKEVS NILGAKWKTI TAEEKKPYEE KYHTEKEAYL
QVIAKEKREC EAMKLLEDEH KQKTAMELLE QYLQFRHEAE KETKKTKKER DPLKPKQPMS
AFFLFSNERR AALLAENKNV LEVAKITGEE WKNMTEEQRG PYEEVLDLWK KTRISIKFLL
AWFDLSIFFL
//
